Index

A

ACC_VOLTAGE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) ACCURATE_MASS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) ACCURATE_MASS_FLAGS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) ACQUIRED_DATE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) ACQUIRED_NAME (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) ACQUIRED_TIME (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) add_centroid() (unidec.modules.plotting.plot1d.Plot1dBase method) add_children() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.waters_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) add_chrom_peaks() (unidec.modules.ChromEng.ChromEngine method) add_chromatogram() (unidec.modules.unidecstructure.ChromatogramContainer method) add_col() (unidec.modules.isolated_packages.spreadsheet.SpreadsheetPanel method) add_cols() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) add_data() (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) add_dataset() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.waters_import_wizard.import_wizard_grid.WizardGrid method) add_doubles() (unidec.IsoDec.engine.IsoDecEngine method) add_eic() (unidec.UniChromCD.UniChromCDApp method) add_empty_line() (unidec.modules.nativez.ColorList method) add_file() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) (unidec.metaunidec.mudstruct.MetaDataSet method) add_files() (unidec.MetaUniDec.UniDecApp method) (unidec.UPP.UPPApp method) add_harmonics() (unidec.IsoDec.engine.IsoDecEngine method) add_history() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) add_legend() (unidec.modules.plotting.PlotBase.PlotBase method) add_line() (unidec.DataCollector.XValueListCtrl method) (unidec.DataCollector.YValueListCtrl method) (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.XValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.YValueListCtrl method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.ManualSelectionWindow.ManualListCrtl method) (unidec.modules.ManualSelectionWindow.SmashListCrtl method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.masstools.MassListCtrl method) (unidec.modules.masstools.OligomerListCtrl method) (unidec.modules.nativez.ColorList method) add_line_to_ss() (unidec.modules.masstools.MassSelection method) add_list_times() (unidec.modules.ChromEng.ChromEngine method) add_manual_selection() (unidec.modules.ChromEng.ChromEngine method) add_mass_eic() (unidec.UniChromCD.UniChromCDApp method) add_noise() (unidec.IsoDec.engine.IsoDecEngine method) add_peak() (unidec.IsoDec.match.MatchedCollection method) add_peaks() (unidec.IsoDec.match.MatchedCollection method) (unidec.modules.peakstructure.Peaks method) (unidec.modules.plotting.PlotAnimations.AnimationWindow method) add_peaks_mass() (unidec.modules.plotting.PlotAnimations.AnimationWindow method) add_peaks_mz() (unidec.modules.plotting.PlotAnimations.AnimationWindow method) add_pk_to_masses() (unidec.IsoDec.match.MatchedCollection method) add_pk_to_masses2() (unidec.IsoDec.match.MatchedCollection method) add_rect() (unidec.modules.plotting.PlotBase.PlotBase method)

add_regular_times() (unidec.modules.ChromEng.ChromEngine method) add_root() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.waters_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) add_rows() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) add_sliding_window() (unidec.modules.ChromEng.ChromEngine method) add_title() (unidec.modules.plotting.PlotBase.PlotBase method) add_to_common_masses() (unidec.modules.masstools.MassSelection method) add_to_recent() (unidec.IsoDec.IDGUI.IsoDecMenu.main_menu method) (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) additional_filters() (unidec.metaunidec.mudhelp.HelpDlg method) additional_plotting() (unidec.metaunidec.mudhelp.HelpDlg method) AdditionalParameters (class in unidec.modules.miscwindows) addtext() (unidec.modules.plotting.PlotBase.PlotBase method) adductmass (unidec.IsoDec.c_interface.IDSettings attribute) after_pick_peaks() (unidec.GUniDec.UniDecApp method) after_unidec_run() (unidec.GUniDec.UniDecApp method) aggregate_points() (in module unidec.UniDecImporter.Agilent.MZFILE) AgilentImporter (class in unidec.UniDecImporter.Agilent.AgilentImporter) ANALOG (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxBaseType attribute) ANALOG_CH1_OFFSET (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) ANALOG_CH2_OFFSET (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) ANALOG_CH3_OFFSET (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) ANALOG_CH4_OFFSET (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) animate_help() (unidec.metaunidec.mudhelp.HelpDlg method) AnimationWindow (class in unidec.modules.plotting.PlotAnimations) area (unidec.IsoDec.c_interface.MPStruct attribute) array_to_html() (in module unidec.modules.html_writer) attrs_to_df() (unidec.metaunidec.mudstruct.MetaDataSet method) auto() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) auto_format() (unidec.modules.peakstructure.Peaks method) auto_from_wizard() (in module unidec.metaunidec.meta_import_wizard.meta_data_importer) (in module unidec.modules.waters_import_wizard.data_importer) auto_gzip() (in module unidec.UniDecImporter.MZML.mzML) auto_import_help() (unidec.metaunidec.mudhelp.HelpDlg method) auto_match_help() (unidec.metaunidec.mudhelp.HelpDlg method) auto_noise_level() (in module unidec.tools) auto_peak_width() (in module unidec.tools) auto_polarity() (unidec.modules.unidec_enginebase.UniDecEngine method) auto_refresh_stop() (unidec.modules.unidec_presbase.UniDecPres method) autocorr() (in module unidec.tools) autocorr_help() (unidec.metaunidec.mudhelp.HelpDlg method) autocorrelation() (unidec.engine.UniDec method) AutocorrWindow (class in unidec.modules.AutocorrWindow) autointegrate() (unidec.engine.UniDec method) autorun() (unidec.engine.UniDec method) autoscale_column_width() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) average() (in module unidec.UniDecImporter.Agilent.MZFILE) average_bin_size() (in module unidec.tools) average_scan() (unidec.UniDecImporter.Agilent.MZFILE.MZFile method) avg_fast() (unidec.UniDecImporter.Importer.Importer method) avg_safe() (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.MZXML.mzXML.MZXMLImporter method) avgmass (unidec.IsoDec.c_interface.MPStruct attribute)

B

BarGraphWindow (class in unidec.metaunidec.ultrameta) barplottop() (unidec.modules.plotting.plot1d.Plot1dBase method) barplottoperrors() (unidec.modules.plotting.plot1d.Plot1dBase method) BASE_PEAK_INTENSITY (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) BASE_PEAK_MASS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) baseline_help() (unidec.metaunidec.mudhelp.HelpDlg method) batch_dd() (in module unidec.modules.DoubleDec) batch_extract() (unidec.metaunidec.mudeng.MetaUniDec method) batch_help() (unidec.metaunidec.mudhelp.HelpDlg method) batch_predict() (unidec.IsoDec.IsoGen.isogen_base.IsoGenModelBase method) (unidec.IsoDec.models.PhaseModel method) batch_process() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) batch_process_spectrum() (unidec.IsoDec.engine.IsoDecEngine method) (unidec.IsoDec.runtime.IsoDecRuntime method) batch_run() (unidec.UniChrom.ChromApp method) batch_run_unidec() (unidec.metaunidec.mudeng.MetaUniDec method) batch_set_config() (unidec.metaunidec.mudeng.MetaUniDec method) before_open() (unidec.modules.CDEng.UniDecCD method) bind_changes() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method)

bind_peakpanel() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) binomial() (in module unidec.modules.fitting) binomial_fit() (in module unidec.modules.fitting) BiopolymerFrame (class in unidec.modules.isolated_packages.biopolymer_calculator) blur() (in module unidec.modules.GridDecon) (in module unidec.modules.GridDecon2) BootMin() (in module unidec.modules.UniFit) BootMinWorker() (in module unidec.modules.UniFit) Bootstrap() (unidec.modules.UniFit.KDmodel method) BOTTLE_NUMBER (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) button1() (unidec.Launcher.Lview method) button10() (unidec.Launcher.Lview method) button11() (unidec.Launcher.Lview method) button12() (unidec.Launcher.Lview method) button2() (unidec.Launcher.Lview method) button3() (unidec.Launcher.Lview method) button4() (unidec.Launcher.Lview method) button5() (unidec.Launcher.Lview method) button6() (unidec.Launcher.Lview method) button7() (unidec.Launcher.Lview method) button8() (unidec.Launcher.Lview method) button9() (unidec.Launcher.Lview method)

C

cal_data() (in module unidec.tools) CAL_DATE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) CAL_MS1_DYNAMIC_PARAMS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) CAL_MS1_FAST_PARAMS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) CAL_MS1_STATIC (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) CAL_MS1_STATIC_PARAMS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) CAL_MS2_DYNAMIC_PARAMS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) CAL_MS2_FAST_PARAMS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) CAL_MS2_STATIC (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) CAL_MS2_STATIC_PARAMS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) CAL_TEMPERATURE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) CAL_TIME (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) calc_averagine_isotope_dist() (in module unidec.modules.isotopetools) calc_bispecific_correct() (in module unidec.modules.matchtools) calc_dna_mass() (in module unidec.modules.biopolymertools) calc_fromula_from_mass() (in module unidec.modules.hramtools) calc_FWHM() (in module unidec.tools) calc_linear_ccs() (in module unidec.modules.IM_functions) calc_linear_ccsconst() (in module unidec.modules.IM_functions) calc_linear_dt() (in module unidec.modules.IM_functions) calc_local_mins() (in module unidec.tools) calc_native_ccs() (in module unidec.modules.IM_functions) calc_pairs() (in module unidec.modules.matchtools) calc_pep_mass() (in module unidec.modules.biopolymertools) calc_rna_mass() (in module unidec.modules.biopolymertools) calc_swoop() (in module unidec.tools) calc_twave_dt_linear() (in module unidec.modules.IM_functions) calc_twave_dt_log() (in module unidec.modules.IM_functions) calc_twave_dt_power() (in module unidec.modules.IM_functions) calculate() (unidec.modules.isolated_packages.biopolymer_calculator.BiopolymerFrame method) calculate_cosinesimilarity() (in module unidec.IsoDec.match) CalculateMassPrecision() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) CanLockMassCorrect() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) cc() (in module unidec.modules.plotting.plateplot) (in module unidec.modules.plotting.plot_waterfall) cconv() (in module unidec.tools) cconv2() (in module unidec.modules.DoubleDec) cconv2D_preB() (in module unidec.modules.CDEng) ccs_transform_stacks() (unidec.modules.HTEng.UniChromCDEng method) CDCalDialog (class in unidec.modules.CDCal) CDListCtrl (class in unidec.modules.CDCal) CDListCtrlPanel (class in unidec.modules.CDCal) CDMainwindow (class in unidec.modules.gui_elements.CDWindow) CDMenu (class in unidec.modules.gui_elements.CDMenu) center_of_mass() (in module unidec.tools) (unidec.engine.UniDec method) CENTRIOD (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxBaseType attribute) centroid_plot() (unidec.modules.plotting.plot1d.Plot1dBase method) change() (unidec.modules.plotting.plot_waterfall.WaterfallFrame method) change_type() (unidec.modules.plotting.plateplot.PlateFrame method) (unidec.modules.plotting.plot_waterfall.WaterfallFrame method) (unidec.modules.SubDiv.SubDivFrame method) check() (unidec.IsoDec.IsoGen.isogen_base.IsoGenEngineBase method) check_badness() (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.modules.unidecstructure.UniDecConfig method) check_centroided() (unidec.UniDecImporter.Importer.Importer method) check_cmaps() (unidec.DataCollector.DataCollector method) check_duplicate_filenames() (unidec.batch.UniDecBatchProcessor method) check_for_floatable() (in module unidec.batch) check_for_value() (in module unidec.batch) check_for_word_in_keys() (in module unidec.batch) check_isomode() (unidec.modules.unidec_enginebase.UniDecEngine method) check_new() (unidec.modules.unidecstructure.UniDecConfig method) check_spacings() (in module unidec.IsoDec.datatools) check_string_for_seq() (in module unidec.modules.matchtools) checkoverlap() (in module unidec.modules.ManualSelectionWindow) CheckReturnCode() (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxCodeHandler method) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxProcessCodeHandler method) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawProcessor method) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawReader method) CHROM (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxBaseType attribute) ChromApp (class in unidec.UniChrom) Chromatogram (class in unidec.modules.unidecstructure) ChromatogramContainer (class in unidec.modules.unidecstructure) ChromDropTarget (class in unidec.modules.gui_elements.ChromWindow) ChromEngine (class in unidec.modules.ChromEng) ChromWindow (class in unidec.modules.gui_elements.ChromWindow) cleanup_recent_file() (unidec.modules.unidec_presbase.UniDecPres method) clear() (unidec.metaunidec.mudeng.MetaUniDec method) (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.modules.ManualSelectionWindow.ManualListCrtl method) (unidec.modules.ManualSelectionWindow.SmashListCrtl method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.masstools.MassListCtrl method) (unidec.modules.masstools.MatchListCtrl method) (unidec.modules.masstools.OligomerListCtrl method) (unidec.modules.unidecstructure.ChromatogramContainer method) clear_all() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.waters_import_wizard.import_wizard_grid.WizardGrid method) (unidec.UPP.UPPApp method) clear_all_plots() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) clear_arrays() (unidec.modules.HTEng.UniChromCDEng method) clear_frame() (unidec.modules.plotting.PlottingWindow.NetworkFrame method) clear_history() (unidec.modules.unidec_enginebase.UniDecEngine method) clear_list() (unidec.DataCollector.XValueListCtrl method) (unidec.DataCollector.YValueListCtrl method) (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.XValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.YValueListCtrl method) (unidec.modules.AutocorrWindow.CorrListCtrl method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.gui_elements.HTCD_ListCtrls.YValueListCtrl method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.isolated_packages.score_window.ScoreListCtrl method)

clear_plot() (unidec.modules.plotting.PlotBase.PlotBase method) clear_plots() (unidec.modules.gui_elements.ChromWindow.ChromWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) clip_all() (in module unidec.modules.plotting.ZoomCommon) clip_none() (in module unidec.modules.plotting.ZoomCommon) Clone() (unidec.modules.isolated_packages.spreadsheet.CutomGridCellAutoWrapStringRenderer method) close() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) (unidec.UniDecImporter.Agilent.AgilentImporter.AgilentImporter method) (unidec.UniDecImporter.Agilent.MZFILE.MZFile method) (unidec.UniDecImporter.I2MS.I2MS.I2MSImporter method) (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.MZXML.mzXML.MZXMLImporter method) Close() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) close() (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) close_ok() (unidec.modules.isolated_packages.biopolymer_calculator.BiopolymerFrame method) closest() (in module unidec.modules.ManualSelectionWindow) code (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxException attribute) COLLISION_ENERGY (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) COLLISION_ENERGY2 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) COLLISION_RF (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) color_by_score() (unidec.modules.peakstructure.Peaks method) color_column() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) color_columns() (unidec.UPP.UPPApp method) color_columns_by_keyword() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) color_item() (unidec.modules.masstools.MatchListCtrl method) color_map_array() (in module unidec.tools) ColorList (class in unidec.modules.nativez) ColorPlot2D (class in unidec.modules.plotting.ColorPlot) colorplotMD() (unidec.modules.plotting.plot1d.Plot1dBase method) column_labels() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.waters_import_wizard.import_wizard_grid.WizardGrid method) combine() (in module unidec.tools) combine_all() (in module unidec.tools) combine_scanpeaks() (unidec.metaunidec.mudeng.MetaUniDec method) combineScan() (unidec.UniDecImporter.Waters.MassLynxRawScanReader.MassLynxRawScanReader method) CommonMasses (class in unidec.modules.masstools) commonprefix() (in module unidec.tools) compare_annotated() (in module unidec.IsoDec.match) compare_matched_ions() (in module unidec.IsoDec.match) compare_matchedcollections() (in module unidec.IsoDec.match) compare_matchedmasses() (in module unidec.IsoDec.match) CompareModels() (in module unidec.modules.UniFit) complex_poisson() (in module unidec.modules.fitting) compress_2d() (in module unidec.modules.IM_functions) CONDITIONS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) config_export() (unidec.modules.unidecstructure.UniDecConfig method) config_import() (unidec.modules.unidecstructure.UniDecConfig method) config_to_settings() (in module unidec.IsoDec.c_interface) continuous_wavelet_transform() (in module unidec.tools) contourplot() (unidec.modules.plotting.plot2d.Plot2dBase method) conv() (in module unidec.modules.GridDecon) (in module unidec.modules.GridDecon2) conv_peak_shape_kernel() (in module unidec.tools) convert() (unidec.modules.CDEng.UniDecCD method) convert_trace_to_ccs() (unidec.modules.HTEng.UniChromCDEng method) convolve_peaks() (unidec.engine.UniDec method) copy() (unidec.modules.isolated_packages.score_window.ScoreListCtrl method) (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.peakstructure.Peaks method) copy_config() (in module unidec.modules.unidec_enginebase) copy_to_clipboard() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) (unidec.modules.unidec_presbase.UniDecPres method) copy_to_string() (unidec.IsoDec.match.MatchedCollection method) correct_avg() (in module unidec.modules.isotopetools) correct_cycle_time() (unidec.modules.HTEng.HTEng method) correctassignments() (in module unidec.modules.ManualSelectionWindow) CorrListCtrl (class in unidec.modules.AutocorrWindow) CorrListCtrlPanel (class in unidec.modules.AutocorrWindow) COUNTER_ELECTRODE_VOLTAGE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) COURSE_LASER_CONTROL (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) cplot() (in module unidec.IsoDec.plots) create_chrom() (unidec.modules.HTEng.UniChromCDEng method) create_data_loaders() (unidec.IsoDec.IsoGen.isogen_base.IsoGenEngineBase method) create_importer() (unidec.UniDecImporter.ImporterFactory.ImporterFactory static method) create_isodist() (in module unidec.IsoDec.match) create_isodist2() (in module unidec.IsoDec.match) create_isodist_full() (in module unidec.IsoDec.match) create_mass_axis() (unidec.modules.CDEng.UniDecCD method) create_merged_dataloader() (unidec.IsoDec.engine.IsoDecEngine method) create_timer() (unidec.modules.unidec_presbase.UniDecPres method) create_timer2() (unidec.modules.unidec_presbase.UniDecPres method) create_training_dataloader() (unidec.IsoDec.engine.IsoDecEngine method) createcompareplot() (unidec.modules.fft_window.FFTWindow method) cscan() (unidec.UniDecImporter.Agilent.MZFILE.MZFile method) css_thresh (unidec.IsoDec.c_interface.IDSettings attribute) csv_reader() (unidec.metaunidec.mudeng.MetaUniDec method) CubePlot (class in unidec.modules.plotting.plot3d) cubeplot() (unidec.modules.plotting.plot3d.CubePlot method) cut() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) CutomGridCellAutoWrapStringRenderer (class in unidec.modules.isolated_packages.spreadsheet)

D

dar_calc() (in module unidec.modules.matchtools) data_extract() (in module unidec.tools) data_extract_grid() (in module unidec.tools) data_processing() (unidec.metaunidec.mudhelp.HelpDlg method) datachop() (in module unidec.tools) DataCollector (class in unidec.DataCollector) (class in unidec.metaunidec.ultrameta) datacompsub() (in module unidec.IsoDec.datatools) (in module unidec.tools) DataContainer (class in unidec.modules.unidecstructure) dataexport() (in module unidec.tools) dataexportbin() (in module unidec.tools) dataprep() (in module unidec.tools) (unidec.UniDecCD.UniDecCDApp method) datasimpsub() (in module unidec.tools) datathreshold (unidec.IsoDec.c_interface.IDSettings attribute) DCDropTarget (class in unidec.DataCollector) (class in unidec.metaunidec.gui_elements.um_list_ctrl) dd_core() (unidec.modules.DoubleDec.DoubleDec method) dd_import() (unidec.modules.DoubleDec.DoubleDec method) dd_prep() (unidec.modules.DoubleDec.DoubleDec method) dd_run() (unidec.modules.DoubleDec.DoubleDec method) DDA (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxBaseType attribute) decimal_formatter() (in module unidec.tools) decon_core() (unidec.modules.CDEng.UniDecCD method) decon_external_call() (unidec.modules.CDEng.UniDecCD method) deconvolve() (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) default_colormaps() (unidec.modules.unidecstructure.UniDecConfig method) default_decon_params() (unidec.modules.unidecstructure.UniDecConfig method) default_file_names() (unidec.modules.unidecstructure.UniDecConfig method) default_high_res() (unidec.modules.unidecstructure.UniDecConfig method) default_isotopic_res() (unidec.modules.unidecstructure.UniDecConfig method)

default_low_res() (unidec.modules.unidecstructure.UniDecConfig method) default_nanodisc() (unidec.modules.unidecstructure.UniDecConfig method) default_params() (unidec.modules.peakstructure.Peaks method) default_zero_charge() (unidec.modules.unidecstructure.UniDecConfig method) delete() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) delete_all() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) delete_cols() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) delete_rows() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) detectoreff() (in module unidec.tools) detectoreff_2d() (in module unidec.modules.IM_functions) detectoverlap() (in module unidec.modules.ManualSelectionWindow) df_to_html() (in module unidec.modules.html_writer) df_to_matchedcollection() (in module unidec.IsoDec.match) dict_to_html() (in module unidec.modules.html_writer) diffs_consecutive() (unidec.modules.peakstructure.Peaks method) diffs_from() (unidec.modules.peakstructure.Peaks method) dlen (unidec.IsoDec.c_interface.IDConfig attribute) dnaseq_to_dist() (in module unidec.IsoDec.IsoGen.isogen_tools) dnaseq_to_vector() (in module unidec.IsoDec.IsoGen.isogen_tools) DotNetArrayToNPArray() (in module unidec.UniDecImporter.Thermo.RawFileReader) double_fft_diff() (in module unidec.tools) DoubleDec (class in unidec.modules.DoubleDec) DoubleInputDialog (class in unidec.modules.miscwindows) Draw() (unidec.modules.isolated_packages.spreadsheet.CutomGridCellAutoWrapStringRenderer method) draw() (unidec.modules.plotting.plateplot.PlateFrame method) (unidec.modules.plotting.plot_waterfall.WaterfallFrame method) draw_graph() (in module unidec.modules.UniFit) draw_graph_structure() (in module unidec.modules.UniFit) draw_mz_curve() (unidec.modules.plotting.PlotBase.PlotBase method) DRE_TRANSMISSION (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) drop_ones() (unidec.IsoDec.engine.IsoDecEngine method) dscore() (unidec.engine.UniDec method) DummyPanel (class in unidec.modules.masstools)

E

eic_ht() (unidec.modules.HTEng.UniChromCDEng method) elen (unidec.IsoDec.c_interface.IDConfig attribute) encode() (unidec.IsoDec.c_interface.IsoDecWrapper method) (unidec.IsoDec.models.PhaseModel method) encode_dir() (in module unidec.IsoDec.encoding) encode_double() (in module unidec.IsoDec.encoding) encode_harmonic() (in module unidec.IsoDec.encoding) encode_noise() (in module unidec.IsoDec.encoding) encode_phase() (in module unidec.IsoDec.encoding) encode_phase_all() (in module unidec.IsoDec.encoding) encode_phase_file() (in module unidec.IsoDec.encoding) endindex (unidec.IsoDec.c_interface.MPStruct attribute) ENTRANCE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) error_function() (in module unidec.modules.isolated_packages.MD_Fitter) (in module unidec.modules.MassFitter) error_function2() (in module unidec.modules.isolated_packages.MD_Fitter) errorbars() (unidec.modules.plotting.plot1d.Plot1dBase method) estimate_areas() (unidec.engine.UniDec method) estimate_FDR() (unidec.engine.UniDec method) evaluate_model() (unidec.IsoDec.IsoGen.isogen_base.IsoGenModelBase method) (unidec.IsoDec.models.PhaseModel method) EvtDriftType() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.waters_import_wizard.import_wizard_grid.WizardGrid method) exe_call() (in module unidec.tools) exe_mode() (unidec.modules.CDEng.UniDecCD method) exp_decay() (in module unidec.modules.fitting) exp_fit() (in module unidec.modules.fitting) expand_list() (unidec.modules.gui_elements.CD_controls.main_controls method) export_arrays() (unidec.UniChromCD.UniChromCDApp method) export_config() (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) export_file() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) export_fits() (unidec.metaunidec.mudeng.MetaUniDec method) (unidec.metaunidec.mudstruct.MetaDataSet method) export_gui_to_config() (unidec.IsoDec.IDGUI.IsoDecControls.main_controls method) (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.metaunidec.mudview.Mainwindow method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ChromWindow.ChromWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.gui_elements.ud_controls.main_controls method)

export_hdf5() (unidec.metaunidec.mudstruct.MetaDataSet method) export_mplstyle() (in module unidec.modules.gui_elements.PlotControlsPanel) export_msalign() (unidec.IsoDec.match.MatchedCollection method) export_params() (unidec.engine.UniDec method) (unidec.metaunidec.mudeng.MetaUniDec method) export_peaks() (unidec.IsoDec.engine.IsoDecEngine method) (unidec.IsoDec.runtime.IsoDecRuntime method) export_prosightlite() (unidec.IsoDec.match.MatchedCollection method) export_results() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) export_selection() (unidec.UniChrom.ChromApp method) export_spectra() (unidec.metaunidec.mudeng.MetaUniDec method) export_then_load() (unidec.ImportWizard.ImportWizard method) export_tsv() (unidec.IsoDec.match.MatchedCollection method) export_vars() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.metaunidec.mudstruct.MetaDataSet method) export_vars_dialog() (unidec.MetaUniDec.MetaUniDecBase method) extract() (in module unidec.UniDecImporter.FileParser) (unidec.metaunidec.image_plotter.ImagingWindow method) Extract() (unidec.modules.DoubleDec.DoubleDec method) extract() (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) (unidec.modules.nativez.NativeZ method) extract2() (unidec.metaunidec.image_plotter.ImagingWindow method) Extract2DPlot (class in unidec.modules.Extract2D) extract3() (unidec.metaunidec.image_plotter.ImagingWindow method) extract4() (unidec.metaunidec.image_plotter.ImagingWindow method) extract_centroids() (in module unidec.IsoDec.encoding) extract_from_data_matrix() (in module unidec.tools) extract_intensities() (unidec.modules.CDEng.UniDecCD method) extract_scans() (in module unidec.UniDecImporter.FileParser) extract_scans_multiple_files() (in module unidec.UniDecImporter.FileParser) extract_subdata() (unidec.modules.HTEng.UniChromCDEng method) extract_swoop_subdata() (unidec.modules.HTEng.UniChromCDEng method) extract_timepoints() (in module unidec.UniDecImporter.FileParser) extractall() (unidec.modules.Extract2D.Extract2DPlot method)

F

FAIMS_COMPENSATION_VOLTAGE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) fake_log() (in module unidec.tools) Fast4PhaseNeuralNetwork (class in unidec.IsoDec.models) Fast8PhaseNeuralNetwork (class in unidec.IsoDec.models) fast_calc_averagine_isotope_dist() (in module unidec.modules.isotopetools) fast_calc_averagine_isotope_dist_dualoutput() (in module unidec.modules.isotopetools) fast_extract() (unidec.modules.nativez.NativeZ method) fast_vlines() (in module unidec.IsoDec.plots) fastcalc_FWHM() (in module unidec.IsoDec.datatools) fastnearest() (in module unidec.IsoDec.datatools) fastpeakdetect() (in module unidec.IsoDec.datatools) fastwithin_abstol() (in module unidec.IsoDec.datatools) fastwithin_abstol_withnearest() (in module unidec.IsoDec.datatools) FD_gauss_wavelet() (in module unidec.tools) fft() (in module unidec.tools) fft_diff() (in module unidec.tools) fft_fun() (in module unidec.modules.CDEng) fft_help() (unidec.metaunidec.mudhelp.HelpDlg method) fft_process() (in module unidec.tools) (unidec.metaunidec.metafft.FFTWindow method) FFTWindow (class in unidec.metaunidec.metafft) (class in unidec.modules.fft_window) fig_to_html_mpld3() (in module unidec.modules.html_writer) file_dialog() (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) file_to_df() (in module unidec.modules.matchtools) FileNameDialog (class in unidec.modules.miscwindows) fill_down() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.waters_import_wizard.import_wizard_grid.WizardGrid method) fill_empty() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) fill_grid() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) fill_text_box() (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) filledplot() (unidec.modules.plotting.plot1d.Plot1dBase method) filter() (unidec.IsoDec.match.MatchedCollection method) filter_centroid_all() (unidec.modules.CDEng.UniDecCD method) filter_centroid_const() (in module unidec.modules.CDEng) filter_indexes() (unidec.modules.hramtools.HRAMSearchSpace method) filter_int() (unidec.modules.CDEng.UniDecCD method) filter_mdist() (unidec.modules.CDEng.UniDecCD method)

filter_mz() (unidec.modules.CDEng.UniDecCD method) filter_peaks() (unidec.engine.UniDec method) (unidec.metaunidec.mudeng.MetaUniDec method) filter_z() (unidec.modules.CDEng.UniDecCD method) filter_zdist() (unidec.modules.CDEng.UniDecCD method) find_dll() (in module unidec.tools) find_file() (in module unidec.batch) find_kernel_file() (in module unidec.batch) find_matched_intensities() (in module unidec.IsoDec.match) find_matches() (in module unidec.IsoDec.match) FindBestModel() (unidec.modules.UniFit.KDmodel method) findend() (in module unidec.modules.UniFit) findpaths() (in module unidec.modules.UniFit) findprecursors() (in module unidec.IsoDec.msalign_export) findprecursors_noms1() (in module unidec.IsoDec.msalign_export) FINE_LASER_CONTROL (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) fit() (unidec.modules.nativez.NativeZ method) fit_all_masses() (unidec.engine.UniDec method) fit_data() (unidec.metaunidec.mudeng.MetaUniDec method) fit_line() (in module unidec.UniDecImporter.ImportTools) fit_peak() (in module unidec.modules.fitting) fix_double_zeros() (in module unidec.tools) fix_parameters() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) fix_text_color() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) fixlists() (in module unidec.modules.UniFit) FocalLoss (class in unidec.IsoDec.models) FOCUS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) format_tag_name() (in module unidec.metaunidec.meta_import_wizard.MetaTagTypes) (in module unidec.modules.waters_import_wizard.TagTypes) formula_to_vector() (in module unidec.IsoDec.IsoGen.isogen_tools) forward() (unidec.IsoDec.IsoGen.isogen_base.HighMassNeuralNetwork method) (unidec.IsoDec.IsoGen.isogen_base.IsoGenNeuralNetwork method) (unidec.IsoDec.models.Fast4PhaseNeuralNetwork method) (unidec.IsoDec.models.Fast8PhaseNeuralNetwork method) (unidec.IsoDec.models.FocalLoss method) (unidec.IsoDec.models.PhaseNeuralNetwork method) fpop() (unidec.modules.unidec_presbase.UniDecPres method) ftdecon() (unidec.modules.HTEng.HTEng method) Ftest() (in module unidec.modules.UniFit)

G

gaussfit() (in module unidec.modules.fitting) gaussian_backgroud_subtract() (in module unidec.tools) gen_html_report() (unidec.modules.unidec_enginebase.UniDecEngine method) gen_isodist() (in module unidec.IsoDec.isogenwrapper) (unidec.IsoDec.isogenwrapper.IsoGenWrapper method) gen_isomike() (in module unidec.IsoDec.isogenwrapper) (unidec.IsoDec.isogenwrapper.IsoGenWrapper method) gen_plot_fig() (in module unidec.IsoDec.plots) gen_style_str() (in module unidec.modules.html_writer) gen_thrash_arrays() (in module unidec.IsoDec.altdecon) generate_image() (unidec.metaunidec.mudeng.MetaUniDec method) generate_masses() (unidec.modules.hramtools.HRAMSearchSpace method) get_aa_mass() (in module unidec.modules.biopolymertools) get_accepted_shifts() (in module unidec.IsoDec.match) get_active() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) get_all_centroids() (in module unidec.IsoDec.datatools) get_all_imms_scans() (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.SingleScanImporter.SingleScanImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_all_scans() (unidec.UniDecImporter.Agilent.AgilentImporter.AgilentImporter method) (unidec.UniDecImporter.I2MS.I2MS.I2MSImporter method) (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.MZXML.mzXML.MZXMLImporter method) (unidec.UniDecImporter.SingleScanImporter.SingleScanImporter method) (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_alts() (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidecstructure.OligomerContainer method) get_analog_voltage1() (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) get_analog_voltage2() (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) get_angle() (unidec.modules.plotting.plot_waterfall.Waterfall3DPlot method) get_apex_mono_diff() (in module unidec.modules.isotopetools) get_attr() (unidec.metaunidec.mudstruct.MetaDataSet method) get_auto_peak_width() (unidec.modules.unidec_enginebase.UniDecEngine method) get_autocorr_ratio() (in module unidec.tools) get_avg_scan() (unidec.UniDecImporter.Agilent.AgilentImporter.AgilentImporter method) (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.MZXML.mzXML.MZXMLImporter method) (unidec.UniDecImporter.SingleScanImporter.SingleScanImporter method) (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_blank_axis() (unidec.modules.plotting.PlotBase.PlotBase method) get_bool() (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.modules.peakstructure.Peaks method) get_bpi() (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_ccs_eic() (unidec.modules.HTEng.UniChromCDEng method) get_cdms_data() (unidec.UniDecImporter.I2MS.I2MS.I2MSImporter method) (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.SingleScanImporter.SingleScanImporter method) (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) get_centroid() (in module unidec.IsoDec.datatools) get_centroids() (in module unidec.IsoDec.datatools) get_charge_peaks() (unidec.engine.UniDec method) get_chrom_peaks() (unidec.modules.ChromEng.ChromEngine method) get_class_weights() (unidec.IsoDec.models.PhaseModel method) get_col_headers() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) get_color_from_index() (in module unidec.tools) get_colors() (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.modules.unidecstructure.UniDecConfig method) get_config_dict() (unidec.modules.unidecstructure.UniDecConfig method) get_cycle_time() (unidec.modules.HTEng.HTEng method) get_data() (in module unidec.modules.hdf5_tools) (unidec.metaunidec.imzml_reader.Imzml_Reader method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.gui_elements.HTCD_ListCtrls.YValueListCtrl method) (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) get_data_from_scans() (unidec.modules.ChromEng.ChromEngine method) get_data_from_spectrum() (in module unidec.UniDecImporter.MZML.mzML) (in module unidec.UniDecImporter.MZXML.mzXML) get_data_from_times() (unidec.modules.ChromEng.ChromEngine method) get_dataset() (in module unidec.modules.hdf5_tools) get_df() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) get_dist_from_formula() (in module unidec.IsoDec.IsoGen.isogen_tools) get_dna_mass() (in module unidec.modules.biopolymertools) get_eic() (unidec.modules.HTEng.UniChromCDEng method) Get_EIC() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) get_eic() (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_estimated_monoiso() (in module unidec.IsoDec.match) get_file_path() (unidec.batch.UniDecBatchProcessor method) get_files() (in module unidec.UniDecImporter.FileParser) get_first_peak() (unidec.modules.HTEng.HTEng method) get_fit() (unidec.modules.CDEng.UniDecCD method) get_fit_linear() (unidec.modules.CDEng.UniDecCD method) get_fit_quadratic() (unidec.modules.CDEng.UniDecCD method) get_folder_path() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) get_from_gui() (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.UniChrom.ChromApp method) (unidec.UPP.UPPApp method) get_fwhm_peak() (in module unidec.IsoDec.datatools) get_glyco_indexes() (in module unidec.tools) Get_Header_Item() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) get_im_data_from_spectrum() (in module unidec.UniDecImporter.MZML.mzML) get_imms_avg_scan() (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.SingleScanImporter.SingleScanImporter method) get_imms_data() (in module unidec.modules.waters_import_wizard.get_data_wrapper) get_imms_scan() (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.SingleScanImporter.SingleScanImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_importer() (in module unidec.UniDecImporter) get_inj_time() (in module unidec.UniDecImporter.MZML.mzML) get_inj_time_array() (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) get_isolation_mz_width() (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) get_items() (unidec.modules.masstools.OligomerListCtrl method) get_kd() (in module unidec.modules.Extract2D) get_limits() (unidec.modules.plotting.PlotBase.PlotBase method) get_linewidth() (unidec.modules.plotting.PlotBase.PlotBase method) get_list() (unidec.DataCollector.XValueListCtrl method) (unidec.DataCollector.YValueListCtrl method) (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.XValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.YValueListCtrl method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.ManualSelectionWindow.ManualListCrtl method) (unidec.modules.ManualSelectionWindow.SmashListCrtl method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.masstools.MassListCtrl method) (unidec.modules.masstools.MatchListCtrl method) (unidec.modules.masstools.OligomerListCtrl method) get_longest_index() (in module unidec.UniDecImporter.ImportTools) get_luminance() (in module unidec.tools) get_mass_data() (in module unidec.modules.hdf5_tools) get_mass_defects() (unidec.modules.peakstructure.Peaks method) get_mass_eic() (unidec.modules.HTEng.UniChromCDEng method) get_matches() (unidec.IsoDec.engine.IsoDecEngine method) get_matches_multiple_z() (unidec.IsoDec.engine.IsoDecEngine method) get_max_data2() (unidec.metaunidec.mudstruct.MetaDataSet method) get_max_scan() (unidec.UniDecImporter.Importer.Importer method) get_max_time() (unidec.UniDecImporter.Importer.Importer method) get_maxes() (unidec.DataCollector.XValueListCtrl method) get_maxima() (unidec.modules.nativez.NativeZ method) get_metadata() (in module unidec.modules.hdf5_tools)

get_minmax_times() (unidec.modules.ChromEng.ChromEngine method) get_mod_files() (unidec.batch.UniDecBatchProcessor method) get_model() (unidec.IsoDec.IsoGen.isogen_base.IsoGenModelBase method) (unidec.IsoDec.models.PhaseModel method) get_ms1_scan_num_id() (in module unidec.IsoDec.msalign_export) get_ms_order() (unidec.UniDecImporter.Agilent.AgilentImporter.AgilentImporter method) (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.MZXML.mzXML.MZXMLImporter method) (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_mzrange() (in module unidec.modules.MassSpecBuilder) get_mzstack() (unidec.engine.UniDec method) get_noise() (in module unidec.IsoDec.datatools) get_num() (in module unidec.modules.hdf5_tools) get_param() (in module unidec.modules.hdf5_tools) get_png() (unidec.modules.plotting.PlotBase.PlotBase method) get_polarity() (in module unidec.UniDecImporter.ImporterFactory) (unidec.UniDecImporter.Agilent.AgilentImporter.AgilentImporter method) (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.MZXML.mzXML.MZXMLImporter method) (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_preset_list() (unidec.modules.unidecstructure.UniDecConfig method) get_property() (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) get_resolution() (in module unidec.UniDecImporter.ImportTools) get_resolution_im() (in module unidec.UniDecImporter.ImportTools) get_rna_mass() (in module unidec.modules.biopolymertools) get_scan_header() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) get_scan_index() (unidec.UniDecImporter.Importer.Importer method) get_scan_time() (unidec.UniDecImporter.Importer.Importer method) get_scans_from_times() (unidec.UniDecImporter.Importer.Importer method) get_selected() (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) get_selected_cells() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) get_selected_rows() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) get_selection() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.masstools.CommonMasses method) get_single_scan() (unidec.UniDecImporter.Agilent.AgilentImporter.AgilentImporter method) (unidec.UniDecImporter.I2MS.I2MS.I2MSImporter method) (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.MZXML.mzXML.MZXMLImporter method) (unidec.UniDecImporter.SingleScanImporter.SingleScanImporter method) (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_site_df() (unidec.modules.masstools.MassSelection method) get_site_headers() (unidec.modules.masstools.MassSelection method) get_site_masses_names() (unidec.modules.masstools.MassSelection method) get_sitematch_list() (in module unidec.modules.matchtools) get_spectra() (unidec.metaunidec.mudstruct.MetaDataSet method) get_spectrum_peaks() (unidec.engine.UniDec method) get_started() (unidec.metaunidec.mudhelp.HelpDlg method) get_stat_code() (in module unidec.modules.waters_import_wizard.data_importer) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_stat_name() (in module unidec.modules.waters_import_wizard.data_importer) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_stats() (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_status_log() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) get_summed_match_intensities() (unidec.modules.unidec_enginebase.UniDecEngine method) get_svg() (unidec.modules.plotting.PlotBase.PlotBase method) get_swoop_eic() (unidec.modules.HTEng.UniChromCDEng method) get_swoop_mz_minmax() (in module unidec.tools) get_table() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) get_tic() (unidec.modules.HTEng.UniChromCDEng method) (unidec.UniDecImporter.Agilent.AgilentImporter.AgilentImporter method) (unidec.UniDecImporter.Importer.Importer method) (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.MZXML.mzXML.MZXMLImporter method) (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) get_time_range() (in module unidec.batch) get_time_scan() (unidec.UniDecImporter.Importer.Importer method) get_times() (unidec.modules.ChromEng.ChromEngine method) get_times_from_scans() (unidec.UniDecImporter.Importer.Importer method) get_tol() (unidec.batch.UniDecBatchProcessor method) get_tune_data() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) get_tvalue() (in module unidec.tools) get_unique_matchedions() (in module unidec.IsoDec.match) get_values_from_gui() (unidec.modules.gui_elements.PlotControlsPanel.PlotControlsPanel method) get_z() (unidec.IsoDec.match.MatchedCollection method) get_z_dist() (unidec.IsoDec.match.MatchedCollection method) get_z_offset() (in module unidec.tools) get_zoomvals() (unidec.modules.plotting.PlotBase.PlotBase method) get_zrange() (in module unidec.modules.MassSpecBuilder) get_zstack() (unidec.engine.UniDec method) get_zvalue() (in module unidec.tools) GetAcquisitionMassRange() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetAcquisitionTimeRange() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetAverageSpectrum() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) GetBestSize() (unidec.modules.isolated_packages.spreadsheet.CutomGridCellAutoWrapStringRenderer method) GetCentroidArray() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) GetCentroidSpectrum() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) GetChromatogram() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) GetDegenKD() (in module unidec.modules.UniFit) GetDriftTime() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetError() (in module unidec.modules.UniFit) GetFilters() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) GetFree() (in module unidec.modules.UniFit) getfromgui() (unidec.metaunidec.metafft.FFTWindow method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) (unidec.modules.MassDefects.MassDefectWindow method) GetFunctionType() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetFunctionTypeString() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetHeaderItem() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetHeaderItems() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetIonMode() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetIonModeString() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetItemsInFunction() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetLastCode() (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxCodeHandler method) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxProcessCodeHandler method) GetLastMessage() (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxCodeHandler method) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxProcessCodeHandler method) GetLines() (in module unidec.modules.waters_import_wizard.data_importer) GetListCtrl() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) (unidec.modules.masstools.CommonMasses method) GetMaxes() (in module unidec.modules.plotting.ZoomCommon) GetMSOrder() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) GetNumberofFunctions() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetRetentionTime() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetScanFilter() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) GetScanItem() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetScanItems() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetScanItemString() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetScansInFunction() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) GetSeqInfo() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) GetSpectrum() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) GetStart() (in module unidec.modules.plotting.ZoomCommon) GetStartEndMass() (in module unidec.modules.waters_import_wizard.data_importer) Gmax2() (in module unidec.modules.CDEng) grab_centroid_data() (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) GraphPlot() (unidec.modules.UniFit.KDmodel method) grid_unidec() (in module unidec.modules.GridDecon) (in module unidec.modules.GridDecon2) GridDeconWindow (class in unidec.modules.GridDecon) (class in unidec.modules.GridDecon2) group_peaks() (unidec.IsoDec.match.MatchedCollection method) gsmooth() (in module unidec.tools) GUARD (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) gzip_files() (in module unidec.UniDecImporter.MZML.mzML)

H

Handler() (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxException method) harray_process() (unidec.modules.CDEng.UniDecCD method) hdf5_to_imzml() (in module unidec.metaunidec.imzml_reader) header_desc() (in module unidec.modules.waters_import_wizard.data_importer) header_test() (in module unidec.UniDecImporter.ImportTools) headers() (unidec.UniDecImporter.Agilent.MZFILE.MZFile method) help_frame() (unidec.UPP.HelpDlg method) HelpDlg (class in unidec.metaunidec.mudhelp) (class in unidec.UPP) hide_columns() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) hide_columns_by_keyword() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) hide_empty_columns() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) HighMassNeuralNetwork (class in unidec.IsoDec.IsoGen.isogen_base) hist2d() (unidec.modules.plotting.plot2d.Plot2dBase method) hist_data_prep() (unidec.modules.CDEng.UniDecCD method) hist_datareduction() (unidec.modules.CDEng.UniDecCD method)

hist_filter_smash() (unidec.modules.CDEng.UniDecCD method) hist_int_threshold() (unidec.modules.CDEng.UniDecCD method) hist_mass_filter() (unidec.modules.CDEng.UniDecCD method) hist_nativeZ_filter() (unidec.modules.CDEng.UniDecCD method) histogram() (unidec.modules.CDEng.UniDecCD method) (unidec.modules.plotting.plot1d.Plot1dBase method) histogramLC() (unidec.modules.HTEng.UniChromCDEng method) HM_RESOLUTION (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) HRAMResult (class in unidec.modules.hramtools) HRAMSearchSpace (class in unidec.modules.hramtools) htdecon() (unidec.modules.HTEng.HTEng method) HTEng (class in unidec.modules.HTEng) html_cleaner() (in module unidec.modules.html_writer) html_close() (in module unidec.modules.html_writer) html_open() (in module unidec.modules.html_writer) html_pagebreak() (in module unidec.modules.html_writer) html_title() (in module unidec.modules.html_writer)

I

I2MSImporter (class in unidec.UniDecImporter.I2MS.I2MS) IDConfig (class in unidec.IsoDec.c_interface) IDSettings (class in unidec.IsoDec.c_interface) ifft_fun() (in module unidec.modules.CDEng) ignore() (unidec.modules.plotting.NoZoomSpan.NoZoomSpan method) (unidec.modules.plotting.ZoomBox.ZoomBox method) (unidec.modules.plotting.ZoomSpan.ZoomSpan method) image_plot() (unidec.metaunidec.image_plotter.ImagingWindow method) ImagingWindow (class in unidec.metaunidec.image_plotter) IMListCtrl (class in unidec.modules.IM_windows) IMListCtrlPanel (class in unidec.modules.IM_windows) import_config() (unidec.modules.unidec_presbase.UniDecPres method) import_config_to_gui() (unidec.IsoDec.IDGUI.IsoDecControls.main_controls method) (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.gui_elements.ud_controls.main_controls method) import_file() (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) import_grids() (unidec.metaunidec.mudstruct.MetaDataSet method) import_grids_and_peaks() (unidec.metaunidec.mudstruct.MetaDataSet method) import_hdf5() (unidec.metaunidec.mudstruct.MetaDataSet method) import_kernel_and_run() (in module unidec.modules.DoubleDec) import_mzml() (unidec.metaunidec.mudeng.MetaUniDec method) import_peaks() (unidec.metaunidec.mudstruct.MetaDataSet method) import_sites() (unidec.modules.masstools.MassSelection method) import_smashfile() (unidec.modules.unidecstructure.UniDecConfig method) import_vars() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.metaunidec.mudstruct.MetaDataSet method) import_window() (unidec.metaunidec.mudhelp.HelpDlg method) Importer (class in unidec.UniDecImporter.Importer) ImporterFactory (class in unidec.UniDecImporter.ImporterFactory) ImporterTests (class in unidec.UniDecImporter.ImportTests) ImportWizard (class in unidec.ImportWizard) (class in unidec.metaunidec.meta_import_wizard.meta_import_wizard) IMToolExtract (class in unidec.modules.IM_windows) IMTools (class in unidec.modules.IM_windows) Imzml_Reader (class in unidec.metaunidec.imzml_reader) imzml_to_hdf5() (in module unidec.metaunidec.imzml_reader) (unidec.metaunidec.mudeng.MetaUniDec method) index_to_oname() (in module unidec.tools) index_to_sname() (in module unidec.modules.matchtools) INFO (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxBaseType attribute) init() (unidec.GUniDec.UniDecApp method) (unidec.Launcher.UniDecLauncher method) (unidec.metaunidec.image_plotter.ImagingWindow method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.plotting.PlotAnimations.AnimationWindow method) (unidec.UniChrom.ChromApp method) (unidec.UniChromCD.UniChromCDApp method) (unidec.UniDecCD.UniDecCDApp method) init_config() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) init_data() (unidec.metaunidec.image_plotter.ImagingWindow method) init_dialog() (unidec.modules.masstools.MassSelection method) init_scans() (unidec.UniDecImporter.Agilent.AgilentImporter.AgilentImporter method) (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) (unidec.UniDecImporter.MZXML.mzXML.MZXMLImporter method) (unidec.UniDecImporter.Thermo.Thermo.ThermoImporter method) (unidec.UniDecImporter.Waters.Waters.WatersDataImporter method) initalize_dialog() (unidec.modules.AutocorrWindow.AutocorrWindow method) initialize() (unidec.modules.plotting.ZoomBox.ZoomBox method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidecstructure.UniDecConfig method) initialize_interface() (unidec.metaunidec.gui_elements.um_list_ctrl.SelectMarker method) (unidec.modules.CDCal.CDCalDialog method) (unidec.modules.gui_elements.peaklistsort.SelectMarker method) (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.modules.miscwindows.AdditionalParameters method) (unidec.modules.miscwindows.DoubleInputDialog method) (unidec.modules.miscwindows.FileNameDialog method) (unidec.modules.miscwindows.MultiInputDialog method) (unidec.modules.miscwindows.SaveFigureDialog method) (unidec.modules.miscwindows.SingleInputDialog method) (unidec.modules.nativez.NativeZ method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method)

initialize_system_paths() (unidec.modules.unidecstructure.UniDecConfig method) initiate_dialog() (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) INLET_METHOD (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) inputs_to_vectors() (unidec.IsoDec.IsoGen.isogen_base.IsoGenEngineBase method) insetplot() (unidec.modules.plotting.plot1d.Plot1dBase method) INSTRUMENT (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) integrate() (in module unidec.tools) (unidec.modules.peakstructure.Peaks method) (unidec.modules.unidec_enginebase.UniDecEngine method) intensitythresh() (in module unidec.modules.IM_functions) (in module unidec.tools) intensitythresh_del() (in module unidec.tools) intensitythresh_sub() (in module unidec.tools) interp_pos() (in module unidec.tools) interp_val() (in module unidec.tools) invinjtime (unidec.UniDecImporter.I2MS.I2MS.I2MSImporter attribute) ION_ENERGY (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) is_close() (in module unidec.IsoDec.match) is_empty_column() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) is_valid() (in module unidec.IsoDec.trainingdata) IsContinuum() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) isempty() (in module unidec.tools) IsLockMassCorrected() (unidec.UniDecImporter.Waters.MassLynxRawInfoReader.MassLynxRawInfoReader method) IsoDecConfig (class in unidec.IsoDec.match) IsoDecDataset (class in unidec.IsoDec.engine) IsoDecEngine (class in unidec.IsoDec.engine) IsoDecPres (class in unidec.IsoDec.IsoDecGUI) IsoDecRuntime (class in unidec.IsoDec.runtime) IsoDecView (class in unidec.IsoDec.IDGUI.IsoDecView) IsoDecWrapper (class in unidec.IsoDec.c_interface) isodist (in module unidec.IsoDec.isogenwrapper) (unidec.IsoDec.c_interface.MPStruct attribute) IsoGenDatasetBase (class in unidec.IsoDec.IsoGen.isogen_base) IsoGenEngineBase (class in unidec.IsoDec.IsoGen.isogen_base) isogenmass() (in module unidec.modules.isotopetools) IsoGenModelBase (class in unidec.IsoDec.IsoGen.isogen_base) IsoGenNeuralNetwork (class in unidec.IsoDec.IsoGen.isogen_base) IsoGenWrapper (class in unidec.IsoDec.isogenwrapper) isogrids() (unidec.modules.plotting.plot3d.CubePlot method) isojim() (in module unidec.IsoDec.IsoGen.isogen_tools) (in module unidec.modules.isotopetools) isolabels() (unidec.modules.plotting.plot3d.CubePlot method) isolated_peak_fit() (in module unidec.modules.fitting) isolength (unidec.IsoDec.c_interface.IDSettings attribute) isolines() (unidec.modules.plotting.plot3d.CubePlot method) isomass (unidec.IsoDec.c_interface.MPStruct attribute) isometric_projection() (unidec.modules.plotting.plot3d.CubePlot method) isomike() (in module unidec.modules.isotopetools) isomz (unidec.IsoDec.c_interface.MPStruct attribute) isoticks() (unidec.modules.plotting.plot3d.CubePlot method) isotope_finder() (in module unidec.IsoDec.datatools) isotopealpha() (in module unidec.modules.isotopetools) isotopebeta() (in module unidec.modules.isotopetools) isotopemid() (in module unidec.modules.isotopetools) isotopesig() (in module unidec.modules.isotopetools) isotopethreshold (unidec.IsoDec.c_interface.IDSettings attribute) isotopic_spectrum() (in module unidec.modules.MassSpecBuilder)

J

JOB_CODE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute)

K

kda_test() (unidec.modules.plotting.PlotBase.PlotBase method) KDmodel (class in unidec.modules.UniFit) kdstruct (class in unidec.modules.UniFit) kendrick_analysis() (in module unidec.tools)

kendrick_continuous() (unidec.engine.UniDec method) kendrick_peaks() (unidec.engine.UniDec method) kill_labels() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) kimport() (unidec.modules.DoubleDec.DoubleDec method) knockdown_rounds (unidec.IsoDec.c_interface.IDSettings attribute)

L

l1 (unidec.IsoDec.c_interface.IDConfig attribute) l2 (unidec.IsoDec.c_interface.IDConfig attribute) l3 (unidec.IsoDec.c_interface.IDConfig attribute) l4 (unidec.IsoDec.c_interface.IDConfig attribute) LAB_NAME (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) label() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) label_plot_correct() (unidec.engine.UniDec method) LASER_REPETITION_RATE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) LASERAIM_XPOS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) LASERAIM_YPOS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) launch() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) LCMP_TFM_WELL (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) ldis() (in module unidec.modules.fitting) ldis_fit() (in module unidec.modules.fitting) least_squares_minimize() (in module unidec.modules.isolated_packages.MD_Fitter) (in module unidec.modules.MassFitter) left_click() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) lengths() (in module unidec.tools) limit_data() (in module unidec.tools) limit_search_space() (unidec.modules.hramtools.HRAMSearchSpace method) lin_fit() (in module unidec.modules.fitting) line_out() (unidec.modules.peakstructure.Peak method) linear_axis() (in module unidec.tools) LINEAR_DETECTOR_VOLTAGE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) linear_interpolation() (in module unidec.tools) linear_regression_peaks() (unidec.modules.unidec_enginebase.UniDecEngine method) LINEAR_SENSITIVITY (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) linearize() (in module unidec.tools) linearize_2d() (in module unidec.modules.IM_functions) linearmodel() (in module unidec.modules.CDEng) lintegrate() (in module unidec.tools) linterpolate() (in module unidec.tools) ListCtrlPanel (class in unidec.DataCollector) (class in unidec.metaunidec.gui_elements.list_ctrls) (class in unidec.metaunidec.gui_elements.um_list_ctrl) (class in unidec.modules.gui_elements.HTCD_ListCtrls) ListTrailerExtraFields() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) LM_RESOLUTION (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute)

load() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.image_plotter.ImagingWindow method) (unidec.metaunidec.ultrameta.DataCollector method) load_chroms() (unidec.UniChromCD.UniChromCDApp method) load_common_masses() (unidec.modules.masstools.MassSelection method) load_config() (unidec.modules.unidec_enginebase.UniDecEngine method) load_csv() (unidec.modules.CDCal.CDCalDialog method) load_data() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.UniDecImporter.SingleScanImporter.SingleScanImporter method) load_default() (unidec.modules.unidec_enginebase.UniDecEngine method) load_eng() (unidec.modules.plotting.plateplot.PlateFrame method) load_example_data() (unidec.IsoDec.IDGUI.IsoDecMenu.main_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) load_file() (unidec.UPP.UPPApp method) load_model() (unidec.IsoDec.IsoGen.isogen_base.IsoGenModelBase method) (unidec.IsoDec.models.PhaseModel method) load_mzml() (unidec.modules.ChromEng.ChromEngine method) load_ofile() (unidec.modules.unidec_enginebase.UniDecEngine method) load_params_from_hdf5() (unidec.metaunidec.ultrameta.DataCollector method) load_peaks() (unidec.modules.unidec_enginebase.UniDecEngine method) load_pks() (unidec.IsoDec.match.MatchedCollection method) load_plot1() (unidec.metaunidec.image_plotter.ImagingWindow method) load_plot4() (unidec.metaunidec.image_plotter.ImagingWindow method) load_state() (unidec.engine.UniDec method) load_to_gui() (unidec.modules.IM_windows.IMTools method) (unidec.UniChrom.ChromApp method) (unidec.UPP.UPPApp method) load_training_data() (unidec.IsoDec.engine.IsoDecEngine method) load_x_from_peaks() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) loadpeaks() (unidec.modules.IM_windows.IMToolExtract method) localmax() (in module unidec.tools) localmax2() (in module unidec.tools) localmaxpos() (in module unidec.tools) LOCKMASS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxBaseType attribute) LOCKMASS_CORRECTION (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) logistic() (in module unidec.modules.fitting) Lview (class in unidec.Launcher)

M

main_controls (class in unidec.IsoDec.IDGUI.IsoDecControls) (class in unidec.metaunidec.gui_elements.ud_cont_meta) (class in unidec.modules.gui_elements.CD_controls) (class in unidec.modules.gui_elements.ud_controls) main_menu (class in unidec.IsoDec.IDGUI.IsoDecMenu) (class in unidec.modules.gui_elements.ud_menu) Mainwindow (class in unidec.metaunidec.mudview) (class in unidec.modules.mainwindow) MainwindowBase (class in unidec.modules.gui_elements.mainwindow_base) make() (unidec.modules.nativez.Zoffset method) make2dplots() (unidec.MetaUniDec.MetaUniDecBase method) make_2d_plot() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.UniChromCD.UniChromCDApp method) make_all_matches() (in module unidec.tools) make_alpha_cmap() (in module unidec.tools) make_charge_time_2dplot() (unidec.UniChromCD.UniChromCDApp method) make_color_plot() (unidec.modules.plotting.ColorPlot.ColorPlot2D method) make_compare_color_plot() (unidec.modules.plotting.ColorPlot.ColorPlot2D method) make_cube_plot() (unidec.GUniDec.UniDecApp method) (unidec.UniChromCD.UniChromCDApp method) make_ext_plots() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) make_f_array() (unidec.modules.nativez.NativeZ method) make_graph_agg() (in module unidec.modules.UniFit) make_grid_plots() (unidec.DataCollector.DataCollector method) make_grids() (unidec.metaunidec.mudeng.MetaUniDec method) make_im_plots() (unidec.GUniDec.UniDecApp method) make_image_plot() (unidec.MetaUniDec.UniDecApp method) make_isolated_match() (in module unidec.tools) make_isomatrices() (unidec.modules.plotting.plot3d.CubePlot method) make_kernel() (in module unidec.modules.DoubleDec) (unidec.modules.CDEng.UniDecCD method) make_list_plots() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) make_mass_cube_plot() (unidec.UniChromCD.UniChromCDApp method) make_mass_list() (in module unidec.modules.isolated_packages.MD_Fitter) (in module unidec.modules.MassFitter) make_mass_spectrum() (in module unidec.modules.MassSpecBuilder) make_mass_time_2dplot() (unidec.UniChromCD.UniChromCDApp method) make_mixed_nanodiscs() (in module unidec.modules.NanodiscBuilder) make_mz_time_2dplot() (unidec.UniChromCD.UniChromCDApp method) make_mzmass_plot() (unidec.UniDecCD.UniDecCDApp method) make_mzmass_plot_continuous() (unidec.UniDecCD.UniDecCDApp method) make_nanodiscs() (in module unidec.modules.NanodiscBuilder) make_oligomers() (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidecstructure.OligomerContainer method) make_peak_shape() (in module unidec.tools) make_peaks_mztab() (in module unidec.tools) make_peaks_mztab_spectrum() (in module unidec.tools) make_plate() (unidec.modules.plotting.plateplot.PlatePlot method) make_plot() (unidec.engine.UniDec method) (unidec.modules.plotting.plateplot.PlateFrame method) (unidec.modules.plotting.plot_waterfall.WaterfallFrame method) (unidec.modules.SubDiv.SubDivFrame method) make_plot_7() (unidec.modules.nativez.NativeZ method) make_pmat() (in module unidec.modules.GridDecon) (in module unidec.modules.GridDecon2) make_preset_menu() (in module unidec.modules.isolated_packages.preset_manager) make_selection() (unidec.UniChrom.ChromApp method) make_shade_plot() (unidec.DataCollector.DataCollector method) make_shifted_peak() (in module unidec.IsoDec.match) make_tic_plot() (unidec.UniChromCD.UniChromCDApp method) make_top() (unidec.MetaUniDec.MetaUniDecBase method) make_waterfall_plots() (unidec.MetaUniDec.MetaUniDecBase method) makebarchart() (unidec.modules.Extract2D.Extract2DPlot method) makeconvspecies() (in module unidec.tools) makedataplot() (unidec.modules.Extract2D.Extract2DPlot method) MakeFitGrid() (unidec.modules.UniFit.KDmodel method) MakeGrid() (in module unidec.modules.UniFit) makegrid() (unidec.modules.Extract2D.Extract2DPlot method) makegrids() (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) makemass() (in module unidec.IsoDec.IsoGen.isogen_tools) (in module unidec.modules.isotopetools) makemassmike() (in module unidec.modules.isotopetools) makeplot() (unidec.metaunidec.metafft.FFTWindow method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) (unidec.modules.gui_elements.PlotControlsPanel.PlotControlWindow method) (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) (unidec.modules.MassDefects.MassDefectWindow method) makeplot1() (unidec.engine.UniDec method) (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.UniDecCD.UniDecCDApp method) makeplot1im() (unidec.engine.UniDec method) makeplot2() (unidec.DataCollector.DataCollector method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) makeplot2_mud() (unidec.MetaUniDec.MetaUniDecBase method) makeplot3() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniDecCD.UniDecCDApp method) makeplot4() (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) makeplot5() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) makeplot6() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.unidec_enginebase.UniDecEngine method) makeplot7() (unidec.MetaUniDec.MetaUniDecBase method) makeplot8() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.MetaUniDec.UniDecApp method) makeplot9() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.MetaUniDec.UniDecApp method) makeplotc() (unidec.UniChrom.ChromApp method) makeplottotal() (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.MassDefects.MassDefectWindow method) makeplotwap() (unidec.modules.Extract2D.Extract2DPlot method) makespecfun() (in module unidec.tools) MakeTexReport() (in module unidec.modules.isolated_packages.texmaker) MakeUniDecConfig() (in module unidec.modules.waters_import_wizard.data_importer) ManualListCrtl (class in unidec.modules.ManualSelectionWindow) ManualListCtrlPanel (class in unidec.modules.ManualSelectionWindow) ManualSelection (class in unidec.modules.ManualSelectionWindow) masked_demultiplex_ht() (unidec.modules.HTEng.HTEng method) mass_diff_c (unidec.IsoDec.c_interface.IDSettings attribute) mass_grid_to_f_grid() (unidec.engine.UniDec method) mass_to_dist() (in module unidec.IsoDec.IsoGen.isogen_tools) mass_to_vector() (in module unidec.IsoDec.IsoGen.isogen_tools) mass_weighted_average() (in module unidec.tools) MassDefectCompareWindow (class in unidec.modules.isolated_packages.MD_compare) MassDefectExtractorWindow (class in unidec.modules.MassDefectExtractor) MassDefectWindow (class in unidec.modules.MassDefects) MassFitter (class in unidec.modules.MassFitter) MassListCtrl (class in unidec.modules.masstools) MassLynxBaseType (class in unidec.UniDecImporter.Waters.MassLynxRawReader) MassLynxCodeHandler (class in unidec.UniDecImporter.Waters.MassLynxRawReader) massLynxDll (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawProcessor attribute) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawReader attribute) MassLynxException MassLynxHeaderItem (class in unidec.UniDecImporter.Waters.MassLynxRawReader) MassLynxProcessCodeHandler (class in unidec.UniDecImporter.Waters.MassLynxRawReader) MassLynxRawChromatogramReader (class in unidec.UniDecImporter.Waters.MassLynxRawChromatogramReader) MassLynxRawInfoReader (class in unidec.UniDecImporter.Waters.MassLynxRawInfoReader) MassLynxRawProcessor (class in unidec.UniDecImporter.Waters.MassLynxRawReader) MassLynxRawReader (class in unidec.UniDecImporter.Waters.MassLynxRawReader) MassLynxRawScanReader (class in unidec.UniDecImporter.Waters.MassLynxRawScanReader) MassLynxScanItem (class in unidec.UniDecImporter.Waters.MassLynxRawReader) MassLynxStringHandler (class in unidec.UniDecImporter.Waters.MassLynxRawReader) MassSelection (class in unidec.modules.masstools) match() (in module unidec.tools) (unidec.modules.unidec_enginebase.UniDecEngine method) match_charge() (in module unidec.IsoDec.trainingdata) match_dirs_recursive() (in module unidec.tools) match_files() (in module unidec.tools) match_files_recursive() (in module unidec.tools) match_peaks() (in module unidec.IsoDec.trainingdata) match_to_target() (unidec.modules.hramtools.HRAMSearchSpace method) MatchedCollection (class in unidec.IsoDec.match) matchedinds (in module unidec.IsoDec.c_interface) matchedindsexp (unidec.IsoDec.c_interface.MPStruct attribute) matchedindsiso (unidec.IsoDec.c_interface.MPStruct attribute) MatchedMass (class in unidec.IsoDec.match) MatchedPeak (class in unidec.IsoDec.match) MatchListCtrl (class in unidec.modules.masstools) matchtol (unidec.IsoDec.c_interface.IDSettings attribute) MAX_DRIFT_TIME_CHANNEL (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) maxshift (unidec.IsoDec.c_interface.IDSettings attribute) maxz (unidec.IsoDec.c_interface.IDConfig attribute) MD_Fitter() (in module unidec.modules.isolated_packages.MD_Fitter) menu_4001() (unidec.modules.gui_elements.ud_menu.main_menu method) menu_401_403() (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.ud_menu.main_menu method) menu_501_503() (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) menu_601_602() (unidec.modules.gui_elements.CDMenu.CDMenu method) menu_fcmaps() (unidec.DataCollector.DataCollector method) menu_xcmaps() (unidec.DataCollector.DataCollector method) merge_im_spectra() (in module unidec.UniDecImporter.ImportTools) merge_in_peaks() (unidec.modules.peakstructure.Peaks method) merge_isodec_pks() (unidec.modules.peakstructure.Peaks method) merge_missed_monoisotopics() (unidec.IsoDec.match.MatchedCollection method) merge_spectra() (in module unidec.UniDecImporter.ImportTools) mergedata() (in module unidec.tools) mergedata2d() (in module unidec.tools) mergedata2dexact() (in module unidec.tools) mergepeaks() (in module unidec.tools) meta_menu (class in unidec.metaunidec.gui_elements.ud_menu_meta) MetaDataSet (class in unidec.metaunidec.mudstruct) MetaUniDec (class in unidec.metaunidec.mudeng) metaunidec_call() (in module unidec.metaunidec.mudeng) MetaUniDecBase (class in unidec.MetaUniDec) min_array() (in module unidec.modules.IM_functions) MIN_DRIFT_TIME_CHANNEL (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) min_score_diff (unidec.IsoDec.c_interface.IDSettings attribute) minareacovered (unidec.IsoDec.c_interface.IDSettings attribute) MinFree() (in module unidec.modules.UniFit)

MinFreeError() (in module unidec.modules.UniFit) Minimize() (in module unidec.modules.UniFit) minpeaks (unidec.IsoDec.c_interface.IDSettings attribute) minusoneaszero (unidec.IsoDec.c_interface.IDSettings attribute) ML_VERSION (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) ModPaths() (unidec.modules.UniFit.KDmodel method) ModPathsAgg() (unidec.modules.UniFit.KDmodel method) module unidec unidec.batch unidec.DataCollector unidec.engine unidec.GUniDec unidec.ImportWizard unidec.IsoDec unidec.IsoDec.altdecon unidec.IsoDec.c_interface unidec.IsoDec.datatools unidec.IsoDec.encoding unidec.IsoDec.engine unidec.IsoDec.IDGUI unidec.IsoDec.IDGUI.IsoDecControls unidec.IsoDec.IDGUI.IsoDecMenu unidec.IsoDec.IDGUI.IsoDecView unidec.IsoDec.IsoDecGUI unidec.IsoDec.IsoGen unidec.IsoDec.IsoGen.isogen_base unidec.IsoDec.IsoGen.isogen_tools unidec.IsoDec.isogenwrapper unidec.IsoDec.match unidec.IsoDec.models unidec.IsoDec.msalign_export unidec.IsoDec.oldisodecfunctions unidec.IsoDec.plots unidec.IsoDec.runtime unidec.IsoDec.trainingdata unidec.Launcher unidec.metaunidec unidec.MetaUniDec unidec.metaunidec.gui_elements unidec.metaunidec.gui_elements.list_ctrls unidec.metaunidec.gui_elements.ud_cont_meta unidec.metaunidec.gui_elements.ud_menu_meta unidec.metaunidec.gui_elements.um_list_ctrl unidec.metaunidec.image_plotter unidec.metaunidec.imzml_reader unidec.metaunidec.meta_import_wizard unidec.metaunidec.meta_import_wizard.meta_data_importer unidec.metaunidec.meta_import_wizard.meta_import_wizard unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl unidec.metaunidec.meta_import_wizard.MetaTagTypes unidec.metaunidec.metafft unidec.metaunidec.mudeng unidec.metaunidec.mudhelp unidec.metaunidec.mudstruct unidec.metaunidec.mudview unidec.metaunidec.test_MUD unidec.metaunidec.ultrameta unidec.modules unidec.modules.AutocorrWindow unidec.modules.biopolymertools unidec.modules.CDCal unidec.modules.CDEng unidec.modules.ChromEng unidec.modules.DoubleDec unidec.modules.Extract2D unidec.modules.fft_window unidec.modules.fitting unidec.modules.GridDecon unidec.modules.GridDecon2 unidec.modules.gui_elements unidec.modules.gui_elements.CD_controls unidec.modules.gui_elements.CDMenu unidec.modules.gui_elements.CDWindow unidec.modules.gui_elements.ChromWindow unidec.modules.gui_elements.HTCD_ListCtrls unidec.modules.gui_elements.mainwindow_base unidec.modules.gui_elements.peaklistsort unidec.modules.gui_elements.PlotControlsPanel unidec.modules.gui_elements.ud_controls unidec.modules.gui_elements.ud_menu unidec.modules.hdf5_tools unidec.modules.hramtools unidec.modules.HTEng unidec.modules.html_writer unidec.modules.IM_functions unidec.modules.IM_windows unidec.modules.isolated_packages unidec.modules.isolated_packages.biopolymer_calculator unidec.modules.isolated_packages.FileDialogs unidec.modules.isolated_packages.MD_compare unidec.modules.isolated_packages.MD_Fitter unidec.modules.isolated_packages.mql_tool unidec.modules.isolated_packages.preset_manager unidec.modules.isolated_packages.score_window unidec.modules.isolated_packages.spreadsheet unidec.modules.isolated_packages.texmaker unidec.modules.isotopetools unidec.modules.mainwindow unidec.modules.ManualSelectionWindow unidec.modules.MassDefectExtractor unidec.modules.MassDefects unidec.modules.MassFitter unidec.modules.MassSpecBuilder unidec.modules.masstools unidec.modules.matchtools unidec.modules.miscwindows unidec.modules.NanodiscBuilder unidec.modules.nativez unidec.modules.peakstructure unidec.modules.peakwidthtools unidec.modules.plotting unidec.modules.plotting.ColorPlot unidec.modules.plotting.NoZoomSpan unidec.modules.plotting.plateplot unidec.modules.plotting.plot1d unidec.modules.plotting.plot2d unidec.modules.plotting.plot3d unidec.modules.plotting.plot_waterfall unidec.modules.plotting.PlotAnimations unidec.modules.plotting.PlotBase unidec.modules.plotting.PlottingWindow unidec.modules.plotting.ZoomBox unidec.modules.plotting.ZoomCommon unidec.modules.plotting.ZoomSpan unidec.modules.SubDiv unidec.modules.unidec_enginebase unidec.modules.unidec_presbase unidec.modules.unidecstructure unidec.modules.UniFit unidec.modules.waters_import_wizard unidec.modules.waters_import_wizard.data_importer unidec.modules.waters_import_wizard.get_data_wrapper unidec.modules.waters_import_wizard.import_wizard_grid unidec.modules.waters_import_wizard.import_wizard_treectrl unidec.modules.waters_import_wizard.TagTypes unidec.tools unidec.UniChrom unidec.UniChromCD unidec.UniDecCD unidec.UniDecImporter unidec.UniDecImporter.Agilent unidec.UniDecImporter.Agilent.AgilentImporter unidec.UniDecImporter.Agilent.MZFILE unidec.UniDecImporter.FileParser unidec.UniDecImporter.I2MS unidec.UniDecImporter.I2MS.I2MS unidec.UniDecImporter.Importer unidec.UniDecImporter.ImporterFactory unidec.UniDecImporter.ImportTests unidec.UniDecImporter.ImportTools unidec.UniDecImporter.MZML unidec.UniDecImporter.MZML.mzML unidec.UniDecImporter.MZXML unidec.UniDecImporter.MZXML.mzXML unidec.UniDecImporter.SingleScanImporter unidec.UniDecImporter.Thermo unidec.UniDecImporter.Thermo.RawFileReader unidec.UniDecImporter.Thermo.Thermo unidec.UniDecImporter.Waters unidec.UniDecImporter.Waters.MassLynxRawChromatogramReader unidec.UniDecImporter.Waters.MassLynxRawInfoReader unidec.UniDecImporter.Waters.MassLynxRawReader unidec.UniDecImporter.Waters.MassLynxRawScanReader unidec.UniDecImporter.Waters.Waters unidec.UPP monoiso (unidec.IsoDec.c_interface.MPStruct attribute) monoisos (unidec.IsoDec.c_interface.MPStruct attribute) mouse_activate() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) mouse_inactivate() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) mperror() (in module unidec.modules.fitting) mpinit() (in module unidec.modules.fitting) MPStruct (class in unidec.IsoDec.c_interface) MQL_TOOL (class in unidec.modules.isolated_packages.mql_tool) MSE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxBaseType attribute) MultiInputDialog (class in unidec.modules.miscwindows) MULTIPLIER1 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) MULTIPLIER2 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) multiplot() (unidec.modules.plotting.plot1d.Plot1dBase method) multipoisson() (in module unidec.modules.fitting) MyApp (class in unidec.modules.isolated_packages.spreadsheet) MyFileDropTarget (class in unidec.IsoDec.IDGUI.IsoDecView) (class in unidec.metaunidec.mudview) (class in unidec.modules.gui_elements.CDWindow) (class in unidec.modules.mainwindow) (class in unidec.UPP) MyGrid (class in unidec.modules.isolated_packages.spreadsheet) mz (unidec.IsoDec.c_interface.MPStruct attribute) MZFile (class in unidec.UniDecImporter.Agilent.MZFILE) MZLimitsEvent (class in unidec.modules.plotting.PlottingWindow) MZMLImporter (class in unidec.UniDecImporter.MZML.mzML) mzwindow (unidec.IsoDec.c_interface.IDSettings attribute) MZXMLImporter (class in unidec.UniDecImporter.MZXML.mzXML)

N

NativeZ (class in unidec.modules.nativez) ndis() (in module unidec.modules.CDEng) (in module unidec.modules.fitting) ndis_fit() (in module unidec.modules.fitting) ndis_std() (in module unidec.modules.fitting) nearest() (in module unidec.tools) nearestunsorted() (in module unidec.tools) NEEDLE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) NetworkFrame (class in unidec.modules.plotting.PlottingWindow) new_axes() (unidec.modules.plotting.NoZoomSpan.NoZoomSpan method) (unidec.modules.plotting.ZoomBox.ZoomBox method) (unidec.modules.plotting.ZoomSpan.ZoomSpan method) new_file() (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.MetaUniDec.UniDecApp method) new_get_data_MS() (in module unidec.modules.waters_import_wizard.get_data_wrapper)

next_free_row() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.waters_import_wizard.import_wizard_grid.WizardGrid method) noise_level2() (in module unidec.tools) nonlinear_axis() (in module unidec.tools) (in module unidec.UniDecImporter.ImportTools) nonlinearize() (in module unidec.tools) nonlinstickconv() (in module unidec.tools) normalize() (in module unidec.tools) normalize_exgrid() (unidec.metaunidec.mudeng.MetaUniDec method) normalize_extracts() (in module unidec.tools) normalize_peaks() (unidec.engine.UniDec method) notchanged (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow attribute) NoZoomSpan (class in unidec.modules.plotting.NoZoomSpan) NUM_SHOTS_PERFORMED (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) NUM_SHOTS_SUMMED (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute)

O

ofile_reader() (in module unidec.modules.unidecstructure) oligomer_help() (unidec.metaunidec.mudhelp.HelpDlg method) OligomerContainer (class in unidec.modules.unidecstructure) OligomerListCtrl (class in unidec.modules.masstools) on_2d_grid() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_2dgrid() (unidec.DataCollector.DataCollector method) on_about() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_absolute_path() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_activate() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.waters_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) on_add() (unidec.modules.CDCal.CDCalDialog method) (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) (unidec.modules.nativez.NativeZ method) on_add_col() (unidec.modules.masstools.MassSelection method) on_add_file() (unidec.MetaUniDec.UniDecApp method) on_add_files() (unidec.UPP.UPPApp method) on_add_from_plot() (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) on_add_line() (unidec.metaunidec.metafft.FFTWindow method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) on_add_mass() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.masstools.MassSelection method) on_add_multilines() (unidec.modules.MassDefects.MassDefectWindow method) on_add_new_common_mass() (unidec.modules.masstools.MassSelection method) on_add_oligomer() (unidec.modules.masstools.MassSelection method) on_add_site() (unidec.modules.masstools.MassSelection method) on_add_to_common() (unidec.modules.masstools.OligomerListCtrl method) on_add_to_ss() (unidec.modules.masstools.MassSelection method) on_add_x() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_add_y() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_additional_filters() (unidec.MetaUniDec.UniDecApp method) on_additional_parameters() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) on_additional_plotting() (unidec.MetaUniDec.UniDecApp method) on_all_next() (unidec.modules.Extract2D.Extract2DPlot method) on_animate() (unidec.DataCollector.DataCollector method) on_animate2() (unidec.DataCollector.DataCollector method) on_animate_2d() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_2d_mass() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_2d_mz() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_annotated_mass() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_annotated_mz() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_help() (unidec.MetaUniDec.UniDecApp method) on_animate_mass() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_mz() (unidec.MetaUniDec.MetaUniDecBase method) on_apply() (unidec.modules.gui_elements.PlotControlsPanel.PlotControlsPanel method) on_auto() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_auto_import_help() (unidec.MetaUniDec.UniDecApp method) on_auto_match_help() (unidec.MetaUniDec.UniDecApp method) on_auto_peak_width() (unidec.modules.unidec_presbase.UniDecPres method) on_auto_set_ct() (unidec.UniChromCD.UniChromCDApp method) on_autocorr() (unidec.DataCollector.DataCollector method) on_autocorr2() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.UniChromCD.UniChromCDApp method) on_autocorr_help() (unidec.MetaUniDec.UniDecApp method) on_autocorr_window() (unidec.modules.masstools.MassSelection method) (unidec.modules.unidec_presbase.UniDecPres method) on_autocorr_window_mud() (unidec.MetaUniDec.MetaUniDecBase method) on_autoformat() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) on_b_select() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_back() (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.MassDefects.MassDefectWindow method) (unidec.modules.plotting.PlotAnimations.AnimationWindow method) on_backcheck() (unidec.IsoDec.IDGUI.IsoDecControls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_bar_graphs() (unidec.metaunidec.ultrameta.DataCollector method) on_baseline_help() (unidec.MetaUniDec.UniDecApp method) on_batch() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.UniDecCD.UniDecCDApp method) on_batch2() (unidec.GUniDec.UniDecApp method) on_batch_chrom1() (unidec.UniChrom.ChromApp method) on_batch_chrom_dirs() (unidec.UniChrom.ChromApp method) on_batch_config() (unidec.MetaUniDec.UniDecApp method) on_batch_cre() (unidec.MetaUniDec.UniDecApp method) on_batch_extract() (unidec.MetaUniDec.UniDecApp method) on_batch_help() (unidec.MetaUniDec.UniDecApp method) on_batch_raw() (unidec.GUniDec.UniDecApp method) on_batch_run() (unidec.MetaUniDec.UniDecApp method) on_biopolymer() (unidec.modules.masstools.MassListCtrl method) (unidec.modules.masstools.OligomerListCtrl method) (unidec.modules.unidec_presbase.UniDecPres method) on_calibrate() (unidec.GUniDec.UniDecApp method) (unidec.UniDecCD.UniDecCDApp method) on_cell_right_click() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) on_center() (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) on_center_of_mass() (unidec.GUniDec.UniDecApp method) on_change() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) on_charge_plot() (unidec.GUniDec.UniDecApp method) on_charge_states() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.modules.unidec_presbase.UniDecPres method) on_charge_states_mud() (unidec.MetaUniDec.MetaUniDecBase method) on_check_for_alt_match() (unidec.modules.masstools.MassSelection method) on_check_manual() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_check_smash() (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_choose_dir() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) (unidec.modules.miscwindows.SaveFigureDialog method) on_chrom_peaks() (unidec.UniChrom.ChromApp method) on_clear() (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) on_clear_masslist() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.masstools.MassSelection method) on_clear_oligolist() (unidec.modules.masstools.MassSelection method) on_clear_sites() (unidec.modules.masstools.MassSelection method) on_clear_spectra() (unidec.UniChrom.ChromApp method) on_close() (unidec.Launcher.UniDecLauncher method) (unidec.metaunidec.gui_elements.um_list_ctrl.SelectMarker method) (unidec.metaunidec.metafft.FFTWindow method) (unidec.modules.AutocorrWindow.AutocorrWindow method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) (unidec.modules.gui_elements.peaklistsort.SelectMarker method) (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) (unidec.modules.masstools.MassSelection method) (unidec.modules.miscwindows.AdditionalParameters method) (unidec.modules.miscwindows.DoubleInputDialog method) (unidec.modules.miscwindows.FileNameDialog method) (unidec.modules.miscwindows.MultiInputDialog method) (unidec.modules.miscwindows.SaveFigureDialog method) (unidec.modules.miscwindows.SingleInputDialog method) (unidec.modules.nativez.NativeZ method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) (unidec.modules.plotting.PlotAnimations.AnimationWindow method) on_close_cancel() (unidec.modules.AutocorrWindow.AutocorrWindow method) (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.modules.isolated_packages.biopolymer_calculator.BiopolymerFrame method) (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) (unidec.modules.masstools.MassSelection method) (unidec.modules.miscwindows.AdditionalParameters method) (unidec.modules.miscwindows.FileNameDialog method) (unidec.modules.miscwindows.SaveFigureDialog method) (unidec.modules.nativez.NativeZ method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) on_collapse_all() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_color_change() (unidec.MetaUniDec.MetaUniDecBase method) on_color_peaks() (unidec.modules.unidec_presbase.UniDecPres method) on_color_plot1d() (unidec.GUniDec.UniDecApp method) on_column_click() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_com() (unidec.modules.MassDefects.MassDefectWindow method) on_common_to_oligo() (unidec.modules.masstools.MassSelection method) on_compare() (unidec.UniDecCD.UniDecCDApp method) on_compare2() (unidec.UniDecCD.UniDecCDApp method) on_compare_proc() (unidec.UniDecCD.UniDecCDApp method) on_compare_regions() (unidec.modules.fft_window.FFTWindow method) on_compare_window() (unidec.modules.MassDefects.MassDefectWindow method) on_conversion_wizard() (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) on_cosine() (unidec.metaunidec.image_plotter.ImagingWindow method) on_custom_defaults() (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) on_data_collector() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) on_data_processing() (unidec.MetaUniDec.UniDecApp method) on_dataprep_button() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChromCD.UniChromCDApp method) (unidec.UniDecCD.UniDecCDApp method) on_defaults() (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.gui_elements.ud_menu.main_menu method) (unidec.modules.isolated_packages.preset_manager.TestWindow method) on_defect() (unidec.DataCollector.DataCollector method) on_delete() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.nativez.NativeZ method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChrom.ChromApp method) on_delete_spectrum() (unidec.MetaUniDec.MetaUniDecBase method) on_differences() (unidec.modules.unidec_presbase.UniDecPres method) on_double_dec() (unidec.modules.gui_elements.ud_controls.main_controls method) on_doubledec() (unidec.DataCollector.DataCollector method) on_draw() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_ex() (unidec.modules.unidec_presbase.UniDecPres method) on_example_data() (unidec.IsoDec.IDGUI.IsoDecMenu.main_menu method) (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) on_exe_mode() (unidec.UniDecCD.UniDecCDApp method) on_exit() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.UPP.UPPApp method) on_exp_fit() (unidec.metaunidec.ultrameta.DataCollector method) (unidec.MetaUniDec.UniDecApp method) on_exp_plot() (unidec.metaunidec.ultrameta.BarGraphWindow method) on_expand_all() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_expand_blue() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_expand_main() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_expand_red() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_expand_yellow() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_export() (unidec.DataCollector.DataCollector method) on_export_arrays() (unidec.UniChromCD.UniChromCDApp method) on_export_params() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_extract() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) on_extract_window() (unidec.modules.MassDefects.MassDefectWindow method) on_f1button() (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) on_f2button() (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) on_fft_help() (unidec.MetaUniDec.UniDecApp method) on_fft_window() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_fft_window2() (unidec.MetaUniDec.MetaUniDecBase method) on_file_name() (unidec.GUniDec.UniDecApp method) on_filter_peaks() (unidec.modules.unidec_presbase.UniDecPres method) on_filter_peaks_MUD() (unidec.MetaUniDec.MetaUniDecBase method) on_fit() (unidec.MetaUniDec.UniDecApp method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) on_fit2() (unidec.modules.Extract2D.Extract2DPlot method) on_fit3() (unidec.modules.Extract2D.Extract2DPlot method) on_fit4() (unidec.modules.Extract2D.Extract2DPlot method) on_fit_masses() (unidec.GUniDec.UniDecApp method) on_fitting() (unidec.DataCollector.DataCollector method) on_flip() (unidec.modules.peakwidthtools.PeakTools2d method) on_flip_mode() (unidec.GUniDec.UniDecApp method) on_flip_tabbed() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) on_flip_twave() (unidec.GUniDec.UniDecApp method) (unidec.modules.IM_windows.IMTools method) on_folder_path_change() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) on_full() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_presbase.UniDecPres method) on_gen_html_report() (unidec.GUniDec.UniDecApp method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniDecCD.UniDecCDApp method) on_get_mzlimits() (unidec.modules.unidec_presbase.UniDecPres method) on_get_peaks() (unidec.modules.fft_window.FFTWindow method) on_getting_started() (unidec.MetaUniDec.UniDecApp method) on_grid_decon() (unidec.GUniDec.UniDecApp method) on_hdf5_open() (unidec.DataCollector.DataCollector method) on_hdf5_to_imzml() (unidec.MetaUniDec.UniDecApp method) on_help_page() (unidec.UPP.UPPApp method) on_hide_columns() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.UPP.UPPApp method) on_hide_empty_columns() (unidec.UPP.UPPApp method) on_hide_height_columns() (unidec.UPP.UPPApp method) on_hide_percent_columns() (unidec.UPP.UPPApp method) on_idle() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_ignore() (unidec.MetaUniDec.MetaUniDecBase method) on_ignore_repopulate() (unidec.UniChromCD.UniChromCDApp method) on_im_extract() (unidec.GUniDec.UniDecApp method) on_im_tools() (unidec.GUniDec.UniDecApp method) on_imaging_viewer() (unidec.MetaUniDec.UniDecApp method) on_import() (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) on_import_masses() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.masstools.MassSelection method) on_import_multiple_scans() (unidec.MetaUniDec.UniDecApp method) on_import_multiple_times() (unidec.MetaUniDec.UniDecApp method) on_import_mzml() (unidec.MetaUniDec.UniDecApp method) on_import_mzml_scans() (unidec.MetaUniDec.UniDecApp method) on_import_oligos() (unidec.modules.masstools.MassSelection method) on_import_sites() (unidec.modules.masstools.MassSelection method) on_import_window() (unidec.MetaUniDec.UniDecApp method) on_import_wizard() (unidec.GUniDec.UniDecApp method) on_imzml_to_hdf5() (unidec.MetaUniDec.UniDecApp method) on_init_config() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) on_integrate() (unidec.GUniDec.UniDecApp method) (unidec.modules.unidec_presbase.UniDecPres method) on_isolate() (unidec.MetaUniDec.MetaUniDecBase method) on_item_expanded() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.waters_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) on_kd_fit() (unidec.DataCollector.DataCollector method) on_kendrick() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_key() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_lab_frame() (unidec.metaunidec.ultrameta.DataCollector method) on_label_avg_charge_states() (unidec.GUniDec.UniDecApp method) on_label_integral() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.modules.unidec_presbase.UniDecPres method) on_label_masses() (unidec.modules.unidec_presbase.UniDecPres method) on_label_max_charge_states() (unidec.GUniDec.UniDecApp method) on_label_names() (unidec.modules.unidec_presbase.UniDecPres method) on_label_peaks() (unidec.modules.MassDefects.MassDefectWindow method) on_label_right_click() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) on_left_click() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_lin_fit() (unidec.metaunidec.ultrameta.DataCollector method) (unidec.MetaUniDec.UniDecApp method) on_lin_plot() (unidec.metaunidec.ultrameta.BarGraphWindow method) on_linear_regression() (unidec.modules.MassDefects.MassDefectWindow method) on_linreg() (unidec.modules.unidec_presbase.UniDecPres method) on_list_add() (unidec.UniChrom.ChromApp method) on_load() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_load_chroms() (unidec.UniChromCD.UniChromCDApp method) on_load_common_masses() (unidec.modules.masstools.MassSelection method) on_load_conf_file() (unidec.modules.unidec_presbase.UniDecPres method) on_load_csv() (unidec.modules.CDCal.CDCalDialog method) on_load_default() (unidec.modules.unidec_presbase.UniDecPres method) on_load_everything() (unidec.GUniDec.UniDecApp method) (unidec.modules.unidec_presbase.UniDecPres method) on_load_file() (unidec.UPP.UPPApp method) on_load_state() (unidec.GUniDec.UniDecApp method) on_local_path() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_m_smooth() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method)

on_manual() (unidec.modules.unidec_presbase.UniDecPres method) on_manual_add() (unidec.UniChrom.ChromApp method) on_mass_list() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_mass_process() (unidec.GUniDec.UniDecApp method) on_mass_tools() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_presbase.UniDecPres method) on_masslist_delete() (unidec.modules.masstools.MassListCtrl method) on_match() (unidec.modules.masstools.MassSelection method) (unidec.modules.unidec_presbase.UniDecPres method) on_match_all() (unidec.modules.masstools.MassSelection method) on_match_isolated() (unidec.modules.masstools.MassSelection method) on_match_sites() (unidec.modules.masstools.MassSelection method) on_motion() (unidec.DataCollector.DataCollector method) (unidec.modules.gui_elements.ChromWindow.ChromWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_motion2() (unidec.metaunidec.ultrameta.DataCollector method) on_mousewheel() (unidec.IsoDec.IDGUI.IsoDecControls.main_controls method) (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_mql() (unidec.GUniDec.UniDecApp method) on_msms_norm() (unidec.DataCollector.DataCollector method) on_nativez_tools() (unidec.GUniDec.UniDecApp method) on_new_file() (unidec.MetaUniDec.UniDecApp method) on_newxy() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) (unidec.modules.plotting.ZoomCommon.ZoomCommon method) on_next() (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.MassDefects.MassDefectWindow method) (unidec.modules.plotting.PlotAnimations.AnimationWindow method) on_oligo_delete() (unidec.modules.masstools.OligomerListCtrl method) on_oligomer_help() (unidec.MetaUniDec.UniDecApp method) on_oligomer_tools() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) on_open() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.MetaUniDec.UniDecApp method) (unidec.UniChrom.ChromApp method) (unidec.UniDecCD.UniDecCDApp method) on_open_all_html() (unidec.UPP.UPPApp method) on_open_cdms_file() (unidec.UniDecCD.UniDecCDApp method) on_open_csv() (unidec.MetaUniDec.UniDecApp method) on_open_dir() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.UniChrom.ChromApp method) on_open_file() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChrom.ChromApp method) (unidec.UniChromCD.UniChromCDApp method) (unidec.UniDecCD.UniDecCDApp method) on_open_global_html() (unidec.UPP.UPPApp method) on_open_hdf5() (unidec.metaunidec.image_plotter.ImagingWindow method) (unidec.UniChrom.ChromApp method) on_open_kernel() (unidec.GUniDec.UniDecApp method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_open_ud() (unidec.UniChrom.ChromApp method) on_open_unidec() (unidec.UPP.UPPApp method) on_p_select() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_paste_spectrum() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.MetaUniDec.UniDecApp method) on_pdf_report() (unidec.GUniDec.UniDecApp method) on_peak_selection() (unidec.MetaUniDec.UniDecApp method) on_peak_width_tool() (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniDecCD.UniDecCDApp method) on_peak_width_tool_help() (unidec.MetaUniDec.UniDecApp method) on_peak_window() (unidec.MetaUniDec.UniDecApp method) on_peaks() (unidec.modules.MassDefects.MassDefectWindow method) on_pick_peaks() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChromCD.UniChromCDApp method) (unidec.UniDecCD.UniDecCDApp method) on_pick_peaks_individual() (unidec.UniChrom.ChromApp method) on_pick_scanpeaks() (unidec.MetaUniDec.MetaUniDecBase method) on_plate_viewer() (unidec.MetaUniDec.UniDecApp method) on_play() (unidec.modules.plotting.PlotAnimations.AnimationWindow method) on_plot() (unidec.modules.CDCal.CDCalDialog method) (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) on_plot_all() (unidec.metaunidec.ultrameta.DataCollector method) on_plot_all_MD() (unidec.metaunidec.ultrameta.DataCollector method) on_plot_composite() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_plot_dists() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) on_plot_isotope_distribution() (unidec.GUniDec.UniDecApp method) on_plot_kernel() (unidec.UniChromCD.UniChromCDApp method) on_plot_nativeccs() (unidec.GUniDec.UniDecApp method) on_plot_offsets() (unidec.GUniDec.UniDecApp method) on_plot_peaks() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.modules.unidec_presbase.UniDecPres method) on_plot_window() (unidec.MetaUniDec.UniDecApp method) on_popup_color_peaks() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_color_peaks_all() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_consec_diff() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_eight() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_eleven() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_five() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_four() (unidec.DataCollector.ListCtrlPanel method) (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_image() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_label_areas_all() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_label_areas_select() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_label_names_all() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_label_names_select() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_nine() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_one() (unidec.DataCollector.ListCtrlPanel method) (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) (unidec.modules.ManualSelectionWindow.ManualListCtrlPanel method) (unidec.modules.ManualSelectionWindow.SmashListCtrlPanel method) on_popup_rename() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_scorecolor() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_seven() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_six() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_ten() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_three() (unidec.DataCollector.ListCtrlPanel method) (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_twelve() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_twelve_full() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_two() (unidec.DataCollector.ListCtrlPanel method) (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_presets_help() (unidec.MetaUniDec.UniDecApp method) on_pw_check() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_raw_open() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) on_redo() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_refresh() (unidec.UniDecCD.UniDecCDApp method) on_release() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_replot() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) (unidec.modules.nativez.NativeZ method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChrom.ChromApp method) (unidec.UniChromCD.UniChromCDApp method) (unidec.UniDecCD.UniDecCDApp method) on_replot_chrom() (unidec.UniChromCD.UniChromCDApp method) on_repopulate() (unidec.MetaUniDec.MetaUniDecBase method) on_reset() (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.nativez.NativeZ method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) (unidec.modules.unidec_presbase.UniDecPres method) on_right_click() (unidec.DataCollector.ListCtrlPanel method) (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.ManualSelectionWindow.ManualListCtrlPanel method) (unidec.modules.ManualSelectionWindow.SmashListCtrlPanel method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.masstools.MatchListCtrl method) (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_right_click_masslist() (unidec.modules.masstools.MassListCtrl method) on_right_click_oligolist() (unidec.modules.masstools.OligomerListCtrl method) on_run() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) (unidec.UPP.UPPApp method) on_run_all_ht() (unidec.UniChromCD.UniChromCDApp method) on_run_ccs() (unidec.UniChromCD.UniChromCDApp method) on_run_eic_ccs() (unidec.UniChromCD.UniChromCDApp method) on_run_eic_ht() (unidec.UniChromCD.UniChromCDApp method) on_run_selected() (unidec.UPP.UPPApp method) on_run_tic_ht() (unidec.UniChromCD.UniChromCDApp method) on_save() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_save_common_masses() (unidec.modules.masstools.MassSelection method) on_save_default() (unidec.modules.unidec_presbase.UniDecPres method) on_save_fig() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.metafft.FFTWindow method) (unidec.metaunidec.ultrameta.DataCollector method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) (unidec.modules.plotting.PlotAnimations.AnimationWindow method) (unidec.modules.plotting.PlotBase.PlotBase method) (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_save_fig_dialog() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_save_fig_pdf() (unidec.metaunidec.metafft.FFTWindow method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) on_save_figPDF() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) on_save_figure_dialog() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_save_figure_eps() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_save_figure_pdf() (unidec.metaunidec.ultrameta.BarGraphWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_save_figure_png() (unidec.metaunidec.ultrameta.BarGraphWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_save_figure_small() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_save_file() (unidec.UPP.UPPApp method) on_save_state() (unidec.GUniDec.UniDecApp method) on_scans_selected() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_score() (unidec.GUniDec.UniDecApp method) on_score2() (unidec.GUniDec.UniDecApp method) on_score_FDR() (unidec.GUniDec.UniDecApp method) on_score_label() (unidec.GUniDec.UniDecApp method) on_score_window() (unidec.GUniDec.UniDecApp method) on_scroll() (in module unidec.IsoDec.plots) on_select_massz_range() (unidec.UniChromCD.UniChromCDApp method) on_select_mzz_region() (unidec.UniChromCD.UniChromCDApp method) on_select_swoop() (unidec.UniChromCD.UniChromCDApp method) on_select_time_range() (unidec.UniChromCD.UniChromCDApp method) on_select_time_range_decon() (unidec.UniChromCD.UniChromCDApp method) on_selected_changed() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.waters_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) on_selection() (unidec.UniChrom.ChromApp method) on_selection_event() (unidec.UniChrom.ChromApp method) on_sig_fit() (unidec.metaunidec.ultrameta.DataCollector method) (unidec.MetaUniDec.UniDecApp method) on_sig_plot() (unidec.metaunidec.ultrameta.BarGraphWindow method) on_simulate() (unidec.modules.masstools.MassSelection method) on_single_charge_states() (unidec.UniChrom.ChromApp method) on_single_delete() (unidec.UniChrom.ChromApp method) on_single_differences() (unidec.UniChrom.ChromApp method) on_single_label_masses() (unidec.UniChrom.ChromApp method) on_size() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_sliding_window() (unidec.UniChrom.ChromApp method) on_smash() (unidec.GUniDec.UniDecApp method) (unidec.UniDecCD.UniDecCDApp method) on_smash_window() (unidec.modules.unidec_presbase.UniDecPres method) on_spectra_color_change() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) on_stori() (unidec.UniDecCD.UniDecCDApp method) on_super_batch() (unidec.GUniDec.UniDecApp method) on_swoop_drag() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_timepart() (unidec.UniChrom.ChromApp method) on_timer() (unidec.modules.unidec_presbase.UniDecPres method) on_timer2() (unidec.modules.unidec_presbase.UniDecPres method) on_total() (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) on_transfer() (unidec.modules.masstools.CommonMasses method) on_transfer_site() (unidec.modules.masstools.CommonMasses method) on_ultra_meta() (unidec.MetaUniDec.UniDecApp method) on_undo() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_unidec_button() (unidec.GUniDec.UniDecApp method) (unidec.IsoDec.IsoDecGUI.IsoDecPres method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniDecCD.UniDecCDApp method) on_unidec_parameters() (unidec.MetaUniDec.UniDecApp method) on_unidec_path() (unidec.GUniDec.UniDecApp method) on_unidec_run() (unidec.UniChrom.ChromApp method) on_update_plot_params() (unidec.modules.gui_elements.PlotControlsPanel.PlotControlWindow method) on_view_alt() (unidec.modules.masstools.MassSelection method) (unidec.modules.masstools.MatchListCtrl method) on_wap() (unidec.modules.Extract2D.Extract2DPlot method) on_wizard() (unidec.MetaUniDec.UniDecApp method) on_write_dialog() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) on_write_hdf5() (unidec.GUniDec.UniDecApp method) on_ylabel() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_z_smooth() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_zerocharge_mass() (unidec.GUniDec.UniDecApp method) OnDropFiles() (unidec.DataCollector.DCDropTarget method) (unidec.IsoDec.IDGUI.IsoDecView.MyFileDropTarget method) (unidec.metaunidec.gui_elements.um_list_ctrl.DCDropTarget method) (unidec.metaunidec.mudview.MyFileDropTarget method) (unidec.modules.gui_elements.CDWindow.MyFileDropTarget method) (unidec.modules.gui_elements.ChromWindow.ChromDropTarget method) (unidec.modules.mainwindow.MyFileDropTarget method) (unidec.UPP.MyFileDropTarget method) onFocus() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) onIdle() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) OnInit() (unidec.modules.isolated_packages.spreadsheet.MyApp method) OnKey() (unidec.modules.isolated_packages.score_window.ScoreListCtrl method) onmove() (unidec.modules.plotting.NoZoomSpan.NoZoomSpan method) (unidec.modules.plotting.plateplot.PlateFrame method) (unidec.modules.plotting.plateplot.PlatePlot method) (unidec.modules.plotting.plot_waterfall.Waterfall3DPlot method) (unidec.modules.plotting.plot_waterfall.WaterfallFrame method) (unidec.modules.plotting.ZoomBox.ZoomBox method) (unidec.modules.plotting.ZoomSpan.ZoomSpan method) onResize() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) OnSize() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.waters_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) open() (unidec.metaunidec.mudeng.MetaUniDec method) open_all_html() (unidec.batch.UniDecBatchProcessor method) open_cdms_file() (unidec.modules.CDEng.UniDecCD method) open_chrom() (unidec.modules.ChromEng.ChromEngine method) open_csv() (unidec.MetaUniDec.UniDecApp method) open_dir_dialog() (in module unidec.modules.isolated_packages.FileDialogs) open_file() (unidec.engine.UniDec method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.CDEng.UniDecCD method) (unidec.modules.HTEng.UniChromCDEng method) (unidec.UniChrom.ChromApp method) open_file_dialog() (in module unidec.modules.isolated_packages.FileDialogs) open_file_in_meta() (unidec.metaunidec.ultrameta.DataCollector method) open_global_html() (unidec.batch.UniDecBatchProcessor method) open_hdf5() (unidec.DataCollector.DataCollector method) open_hdf5_file() (unidec.modules.ChromEng.ChromEngine method) (unidec.UniChrom.ChromApp method) open_in_browser() (unidec.UPP.HelpDlg method) open_link() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) open_most_recent() (unidec.modules.unidec_presbase.UniDecPres method) open_multiple_dir_dialog() (in module unidec.modules.isolated_packages.FileDialogs) open_multiple_files_dialog() (in module unidec.modules.isolated_packages.FileDialogs) open_results_file() (unidec.UPP.UPPApp method) open_single_dir_dialog() (in module unidec.modules.isolated_packages.FileDialogs) open_test_spectrum() (unidec.engine.UniDec method) open_unidec() (unidec.UPP.UPPApp method) optimize_shift2() (in module unidec.IsoDec.match) OutlierTest() (unidec.modules.UniFit.KDmodel method) oxidation_analysis() (unidec.modules.unidec_enginebase.UniDecEngine method)

P

pad_data() (in module unidec.tools) pad_data_length() (in module unidec.tools) pad_two_power() (in module unidec.tools) pair_glyco() (unidec.modules.unidecstructure.OligomerContainer method) pair_glyco_matches() (in module unidec.tools) parse() (in module unidec.UniDecImporter.FileParser) parse_file() (in module unidec.metaunidec.meta_import_wizard.meta_data_importer) (in module unidec.modules.waters_import_wizard.data_importer) (unidec.metaunidec.mudeng.MetaUniDec method) parse_file_name() (unidec.modules.HTEng.HTEng method) parse_fmoddf() (in module unidec.modules.matchtools) parse_global_fixed_mod() (in module unidec.modules.matchtools) parse_multiple() (in module unidec.UniDecImporter.FileParser) parse_multiple_files() (unidec.metaunidec.mudeng.MetaUniDec method) parse_vmoddf() (in module unidec.modules.matchtools) pass_data_in() (unidec.engine.UniDec method) paste() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) path (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawProcessor attribute) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawReader attribute) pathtofile (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawProcessor attribute) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawReader attribute) PDFTexReport() (in module unidec.modules.isolated_packages.texmaker) Peak (class in unidec.modules.peakstructure) peak_extract() (unidec.modules.nativez.NativeZ method) peak_mz_z_df_to_matchedcollection() (in module unidec.IsoDec.match) peak_plots() (unidec.MetaUniDec.UniDecApp method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChrom.ChromApp method) peak_selection() (unidec.metaunidec.mudhelp.HelpDlg method) peak_width_tool_help() (unidec.metaunidec.mudhelp.HelpDlg method) peak_window() (unidec.metaunidec.mudhelp.HelpDlg method) peakdetect() (in module unidec.tools) (unidec.modules.plotting.ZoomCommon.ZoomCommon method) peakdetect_nonlinear() (in module unidec.tools) peakint (unidec.IsoDec.c_interface.MPStruct attribute) PeakListCtrlPanel (class in unidec.modules.gui_elements.peaklistsort) peakmass (unidec.IsoDec.c_interface.MPStruct attribute) Peaks (class in unidec.modules.peakstructure) peaks_error_FWHM() (in module unidec.tools) peaks_error_mean() (in module unidec.tools) peaks_error_replicates() (unidec.metaunidec.mudeng.MetaUniDec method) peaks_heights() (unidec.metaunidec.mudeng.MetaUniDec method) PEAKS_IN_SCAN (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) peakthresh (unidec.IsoDec.c_interface.IDSettings attribute) PeakTools1d (class in unidec.modules.peakwidthtools) PeakTools2d (class in unidec.modules.peakwidthtools) peakwindow (unidec.IsoDec.c_interface.IDSettings attribute) peptide_to_dist() (in module unidec.IsoDec.IsoGen.isogen_tools) peptide_to_vector() (in module unidec.IsoDec.IsoGen.isogen_tools) perform_fit() (unidec.modules.MassFitter.MassFitter method) phase_predictor() (unidec.IsoDec.engine.IsoDecEngine method) (unidec.IsoDec.runtime.IsoDecRuntime method) PhaseModel (class in unidec.IsoDec.models) PhaseNeuralNetwork (class in unidec.IsoDec.models) phaseres (unidec.IsoDec.c_interface.IDSettings attribute) pick_peaks() (unidec.engine.UniDec method) (unidec.metaunidec.mudeng.MetaUniDec method) (unidec.UniDecCD.UniDecCDApp method) pick_scanpeaks() (unidec.metaunidec.mudeng.MetaUniDec method) pks_csscore() (unidec.engine.UniDec method) pks_fscore() (unidec.engine.UniDec method) pks_mscore() (unidec.engine.UniDec method) pks_to_mass() (unidec.IsoDec.engine.IsoDecEngine method) (unidec.IsoDec.runtime.IsoDecRuntime method) pks_uscore() (unidec.engine.UniDec method) PlateFrame (class in unidec.modules.plotting.plateplot) PlatePlot (class in unidec.modules.plotting.plateplot) Plot1d (class in unidec.modules.plotting.PlottingWindow) Plot1dBase (class in unidec.modules.plotting.plot1d) plot2() (unidec.modules.DoubleDec.DoubleDec method) Plot2d (class in unidec.modules.plotting.PlottingWindow) Plot2dBase (class in unidec.modules.plotting.plot2d) plot_add() (unidec.modules.CDEng.UniDecCD method) plot_chrom_shading() (unidec.UniChrom.ChromApp method) plot_chromatograms() (unidec.UniChromCD.UniChromCDApp method) plot_hist() (unidec.modules.CDEng.UniDecCD method) plot_integral() (unidec.modules.unidec_presbase.UniDecPres method) plot_mass_for_eic() (unidec.UniChromCD.UniChromCDApp method) plot_mass_peaks() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) plot_mz_peaks() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) plot_mz_values() (unidec.metaunidec.image_plotter.ImagingWindow method) plot_mzmass_hist() (unidec.modules.CDEng.UniDecCD method) plot_native_z() (unidec.modules.plotting.plot2d.Plot2dBase method) plot_pks() (in module unidec.IsoDec.plots) plot_single_mass() (unidec.UniChrom.ChromApp method) plot_single_mz() (unidec.UniChrom.ChromApp method)

plot_single_pks() (unidec.UniChrom.ChromApp method) plot_sums() (unidec.MetaUniDec.MetaUniDecBase method) plot_theo_mass() (unidec.modules.unidec_presbase.UniDecPres method) plot_window() (unidec.metaunidec.mudhelp.HelpDlg method) plot_zoffs() (unidec.modules.nativez.NativeZ method) plotadd() (unidec.modules.plotting.plot1d.Plot1dBase method) plotadddot() (unidec.modules.plotting.PlotBase.PlotBase method) PlotAny (class in unidec.modules.plotting.PlottingWindow) PlotBase (class in unidec.modules.plotting.PlotBase) PlotControlsPanel (class in unidec.modules.gui_elements.PlotControlsPanel) PlotControlWindow (class in unidec.modules.gui_elements.PlotControlsPanel) PlotHist() (unidec.modules.UniFit.KDmodel method) plotkernel() (unidec.UniDecCD.UniDecCDApp method) plotnoise() (unidec.UniDecCD.UniDecCDApp method) PlotPeaks() (unidec.modules.DoubleDec.DoubleDec method) plotrefreshtop() (unidec.modules.plotting.plot1d.Plot1dBase method) PlottingWindowBase (class in unidec.modules.plotting.PlottingWindow) PlotTrace() (unidec.modules.UniFit.KDmodel method) plusoneintwindow (unidec.IsoDec.c_interface.IDSettings attribute) png_to_html() (in module unidec.modules.html_writer) poisson() (in module unidec.modules.fitting) poisson_fit() (in module unidec.modules.fitting) poisson_mono_di() (in module unidec.modules.fitting) poly_fit() (in module unidec.modules.fitting) polydispersity_index() (in module unidec.tools) (unidec.modules.unidec_enginebase.UniDecEngine method) polynomial_background_subtract() (in module unidec.tools) pop_from_peaks() (unidec.modules.masstools.MassSelection method) pop_oligo_all() (unidec.modules.masstools.MassSelection method) pop_oligo_iso() (unidec.modules.masstools.MassSelection method) pop_oligo_sites() (unidec.modules.masstools.MassSelection method) populate() (unidec.DataCollector.XValueListCtrl method) (unidec.DataCollector.YValueListCtrl method) (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.XValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.YValueListCtrl method) (unidec.modules.AutocorrWindow.CorrListCtrl method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.gui_elements.HTCD_ListCtrls.YValueListCtrl method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.isolated_packages.score_window.ScoreFrame method) (unidec.modules.isolated_packages.score_window.ScoreListCtrl method) (unidec.modules.ManualSelectionWindow.ManualListCrtl method) (unidec.modules.ManualSelectionWindow.SmashListCrtl method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.masstools.MassListCtrl method) (unidec.modules.masstools.MatchListCtrl method) (unidec.modules.masstools.OligomerListCtrl method) (unidec.modules.plotting.plateplot.PlatePlot method) populate_list() (unidec.modules.nativez.NativeZ method) populate_tree() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.waters_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) post_extract() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) predict() (unidec.IsoDec.IsoGen.isogen_base.IsoGenEngineBase method) (unidec.IsoDec.IsoGen.isogen_base.IsoGenModelBase method) (unidec.IsoDec.models.PhaseModel method) predict_apex_mono_diff() (in module unidec.modules.isotopetools) predict_charge() (in module unidec.modules.isotopetools) (in module unidec.tools) (unidec.IsoDec.c_interface.IsoDecWrapper method) predict_returnvec() (unidec.IsoDec.models.PhaseModel method) prep_hist() (unidec.modules.HTEng.UniChromCDEng method) prep_time_domain() (unidec.modules.HTEng.UniChromCDEng method) pres (unidec.IsoDec.c_interface.IDConfig attribute) presets_help() (unidec.metaunidec.mudhelp.HelpDlg method) press() (unidec.modules.plotting.NoZoomSpan.NoZoomSpan method) (unidec.modules.plotting.ZoomBox.ZoomBox method) (unidec.modules.plotting.ZoomSpan.ZoomSpan method) print_config() (unidec.modules.unidecstructure.UniDecConfig method) print_model() (in module unidec.IsoDec.models) PrintInfo() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) PROBE_TEMPERATURE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) process_data() (unidec.engine.UniDec method) (unidec.metaunidec.mudeng.MetaUniDec method) (unidec.modules.CDEng.UniDecCD method) process_data_2d() (in module unidec.modules.IM_functions) process_data_scans() (unidec.modules.HTEng.UniChromCDEng method) process_dir() (in module unidec.IsoDec.trainingdata) process_file() (in module unidec.IsoDec.trainingdata) (unidec.IsoDec.engine.IsoDecEngine method) (unidec.IsoDec.runtime.IsoDecRuntime method) process_mass_data() (unidec.engine.UniDec method) process_spectrum() (unidec.IsoDec.c_interface.IsoDecWrapper method) PSD_FACTOR_1 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) PSD_STEP_MAJOR (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) PSD_STEP_MINOR (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) psfit() (in module unidec.modules.fitting)

Q

QUAD_PEAK_WIDTH (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) QUAD_START_MASS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) QUAD_STOP_MASS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) quadraticmodel() (in module unidec.modules.CDEng)

query() (unidec.modules.isolated_packages.mql_tool.MQL_TOOL method) quick_auto() (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChrom.ChromApp method) quit_application() (unidec.modules.unidec_presbase.UniDecPres method)

R

range_overlap() (in module unidec.modules.ManualSelectionWindow) RAW_EE_CE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) RAW_EE_CV (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) raw_file_info() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.waters_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) raw_process() (unidec.engine.UniDec method) RAW_STAT_SWAVE_NORMALISATION_FACTOR (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) RawFileReader (class in unidec.UniDecImporter.Thermo.RawFileReader) read_attr() (in module unidec.metaunidec.ultrameta) (in module unidec.modules.hdf5_tools) (in module unidec.modules.unidecstructure) read_fasta() (in module unidec.modules.biopolymertools) read_hdf5() (unidec.metaunidec.mudstruct.Spectrum method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidecstructure.DataContainer method) (unidec.modules.unidecstructure.UniDecConfig method) read_manual_annotations() (in module unidec.IsoDec.match) read_msalign_to_matchedcollection() (in module unidec.IsoDec.match) read_recent() (unidec.modules.unidec_presbase.UniDecPres method) read_tolerance() (unidec.modules.masstools.MassSelection method) ReadBPI() (unidec.UniDecImporter.Waters.MassLynxRawChromatogramReader.MassLynxRawChromatogramReader method) ReadDriftScan() (unidec.UniDecImporter.Waters.MassLynxRawScanReader.MassLynxRawScanReader method) ReadMassChromatogram() (unidec.UniDecImporter.Waters.MassLynxRawChromatogramReader.MassLynxRawChromatogramReader method) ReadMassChromatograms() (unidec.UniDecImporter.Waters.MassLynxRawChromatogramReader.MassLynxRawChromatogramReader method) ReadScan() (unidec.UniDecImporter.Waters.MassLynxRawScanReader.MassLynxRawScanReader method) ReadScanFlags() (unidec.UniDecImporter.Waters.MassLynxRawScanReader.MassLynxRawScanReader method) ReadScanInformation() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) ReadTIC() (unidec.UniDecImporter.Waters.MassLynxRawChromatogramReader.MassLynxRawChromatogramReader method) realisolength (unidec.IsoDec.c_interface.MPStruct attribute) recolor() (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) recolor_spectra() (unidec.MetaUniDec.MetaUniDecBase method) recursive_repack_hdf5() (unidec.MetaUniDec.MetaUniDecBase method) redo() (unidec.modules.unidec_enginebase.UniDecEngine method) REFERENCE_SCAN (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) REFLECTRON (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) REFLECTRON_DETECTOR_VOLTAGE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) REFLECTRON_FIELD_LENGTH (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) REFLECTRON_FIELD_LENGTH_ALT (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) REFLECTRON_LENGTH (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) REFLECTRON_LENGTH_ALT (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) REFLECTRON_LENS_VOLTAGE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) REFLECTRON_SENSITIVITY (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) REFLECTRON_VOLT (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) refresh_plot() (unidec.modules.plotting.PlotAnimations.AnimationWindow method) release() (unidec.modules.plotting.NoZoomSpan.NoZoomSpan method) (unidec.modules.plotting.ZoomBox.ZoomBox method) (unidec.modules.plotting.ZoomSpan.ZoomSpan method) ReleaseMemory() (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawProcessor static method) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawReader static method) remake_mainwindow() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) (unidec.UniDecCD.UniDecCDApp method) remove_columns() (in module unidec.batch) remove_data() (unidec.metaunidec.mudstruct.MetaDataSet method) remove_empty() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) remove_middle_zeros() (in module unidec.tools) remove_noise() (in module unidec.tools)

remove_noise_cdata() (in module unidec.IsoDec.datatools) remove_noise_peaks() (in module unidec.IsoDec.match) remove_row() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.waters_import_wizard.import_wizard_grid.WizardGrid method) removeduplicates() (in module unidec.tools) rename_col() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) rename_column() (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) rename_var1() (unidec.MetaUniDec.MetaUniDecBase method) rename_var2() (unidec.MetaUniDec.MetaUniDecBase method) reorder() (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) repack_hdf5() (unidec.MetaUniDec.MetaUniDecBase method) repaint() (unidec.modules.plotting.PlotBase.PlotBase method) (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) replace_dataset() (in module unidec.modules.hdf5_tools) replace_dataset_strings() (in module unidec.modules.hdf5_tools) replot() (unidec.modules.plotting.plateplot.PlateFrame method) (unidec.modules.SubDiv.SubDivFrame method) repopulate() (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.modules.gui_elements.HTCD_ListCtrls.YValueListCtrl method) (unidec.modules.masstools.CommonMasses method) reset_config() (unidec.modules.unidec_enginebase.UniDecEngine method) reset_hidden_columns() (unidec.UPP.UPPApp method) reset_reader() (unidec.UniDecImporter.MZML.mzML.MZMLImporter method) reset_vars() (unidec.modules.ChromEng.ChromEngine method) reset_zoom() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.plotting.PlotBase.PlotBase method) ResetVisible() (in module unidec.modules.plotting.ZoomCommon) resize() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.mainwindow.Mainwindow method) Return() (unidec.modules.UniFit.KDmodel method) return_data() (unidec.modules.nativez.ColorList method) RF_VOLTAGE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) rfft() (in module unidec.tools) right_click() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) rnaseq_to_dist() (in module unidec.IsoDec.IsoGen.isogen_tools) rnaseq_to_vector() (in module unidec.IsoDec.IsoGen.isogen_tools) round_to_nearest() (in module unidec.tools) run_all_ht() (unidec.modules.HTEng.UniChromCDEng method) (unidec.UniChromCD.UniChromCDApp method) run_all_mass_transform() (unidec.UniChromCD.UniChromCDApp method) run_autocorr() (unidec.modules.AutocorrWindow.AutocorrWindow method) run_correct_pair() (unidec.batch.UniDecBatchProcessor method) run_dar() (unidec.batch.UniDecBatchProcessor method) run_deconvolution() (unidec.modules.CDEng.UniDecCD method) run_demultiplex() (unidec.modules.HTEng.HTEng method) run_df() (unidec.batch.UniDecBatchProcessor method) run_eic_ht() (unidec.UniChromCD.UniChromCDApp method) run_file() (unidec.batch.UniDecBatchProcessor method) run_get_data() (in module unidec.modules.waters_import_wizard.data_importer) run_hdf5() (unidec.metaunidec.ultrameta.DataCollector method) run_launcher() (in module unidec.Launcher) run_multip() (unidec.modules.Extract2D.Extract2DPlot method) run_tic_ht() (unidec.UniChromCD.UniChromCDApp method) run_training() (unidec.IsoDec.IsoGen.isogen_base.IsoGenModelBase method) run_unidec() (unidec.engine.UniDec method) (unidec.metaunidec.mudeng.MetaUniDec method) RunBootstrap() (unidec.modules.UniFit.KDmodel method) RunKDFit() (unidec.modules.UniFit.KDmodel method)

S

safedivide() (in module unidec.modules.CDEng) (in module unidec.modules.UniFit) (in module unidec.tools) safedivide1() (in module unidec.tools) safemax() (unidec.metaunidec.mudstruct.MetaDataSet method) SAMPLE_DESCRIPTION (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) SAMPLE_ID (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) SAMPLE_PLATE_VOLT (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) SAMPLING_CONE_VOLTAGE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) save_all_figures() (unidec.metaunidec.ultrameta.BarGraphWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) save_bad_data() (unidec.IsoDec.engine.IsoDecEngine method) save_chroms() (unidec.UniChromCD.UniChromCDApp method) save_default() (unidec.modules.unidec_enginebase.UniDecEngine method) save_encoding() (in module unidec.IsoDec.encoding) save_fig() (unidec.modules.plotting.PlotAnimations.AnimationWindow method) save_figure() (unidec.modules.plotting.PlotBase.PlotBase method) save_figures() (unidec.modules.nativez.NativeZ method) save_file() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) save_file_dialog() (in module unidec.modules.isolated_packages.FileDialogs) save_model() (unidec.IsoDec.IsoGen.isogen_base.IsoGenModelBase method) (unidec.IsoDec.models.PhaseModel method) save_model_to_binary() (in module unidec.IsoDec.IsoGen.isogen_base) (in module unidec.IsoDec.models) save_pks() (unidec.IsoDec.match.MatchedCollection method) save_state() (unidec.engine.UniDec method) SaveFigureDialog (class in unidec.modules.miscwindows) savetxt() (in module unidec.tools) savgol() (in module unidec.tools) savgol_background_subtract() (in module unidec.tools) SCAN (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxBaseType attribute) scan() (unidec.UniDecImporter.Agilent.MZFILE.MZFile method) SCAN_ERROR_FLAG (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) scan_info() (unidec.UniDecImporter.Agilent.MZFILE.MZFile method) SCAN_PUSH_COUNT (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) scan_range() (unidec.UniDecImporter.Agilent.MZFILE.MZFile method) (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) scan_range_from_inputs() (unidec.UniDecImporter.Importer.Importer method) scan_time_from_scan_name() (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method) scanpeaks_extracts() (unidec.metaunidec.mudeng.MetaUniDec method) scans_selected() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) ScanSelectedEvent (class in unidec.modules.plotting.PlottingWindow) scatterplottop() (unidec.modules.plotting.plot1d.Plot1dBase method) score (unidec.IsoDec.c_interface.MPStruct attribute) score_minimum() (in module unidec.engine) score_plots() (in module unidec.modules.isolated_packages.score_window) score_plots2() (in module unidec.modules.isolated_packages.score_window) score_window() (in module unidec.modules.isolated_packages.score_window) ScoreFrame (class in unidec.modules.isolated_packages.score_window) ScoreListCtrl (class in unidec.modules.isolated_packages.score_window) scr() (in module unidec.modules.isolated_packages.score_window) scr2() (in module unidec.modules.isolated_packages.score_window) search_by_id() (in module unidec.UniDecImporter.MZML.mzML) search_extern() (in module unidec.modules.waters_import_wizard.data_importer) SEGMENT_NUMBER (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) SEGMENT_TYPE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) select_all() (unidec.UniChrom.ChromApp method) select_ht_range() (unidec.modules.HTEng.UniChromCDEng method) (unidec.UniChromCD.UniChromCDApp method) select_raw_range() (unidec.modules.HTEng.UniChromCDEng method) SelectMarker (class in unidec.metaunidec.gui_elements.um_list_ctrl) (class in unidec.modules.gui_elements.peaklistsort) set_active() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) set_angle() (unidec.modules.plotting.plot_waterfall.Waterfall3DPlot method) set_aspect() (unidec.modules.plotting.PlotBase.PlotBase method) set_auto_ylim() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) set_clipping() (in module unidec.modules.plotting.ZoomCommon) (unidec.modules.plotting.ZoomBox.ZoomBox method) set_col_headers() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) set_col_labels() (unidec.modules.isolated_packages.spreadsheet.SpreadsheetPanel method) set_color() (unidec.modules.plotting.PlotBase.PlotBase method) set_debug_apis() (in module unidec.IsoDec.models) set_df() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) set_labels() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.waters_import_wizard.import_wizard_grid.WizardGrid method) set_manual() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) set_manual_y() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) SET_MASS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) set_nticks() (unidec.modules.plotting.PlotBase.PlotBase method) set_param_from_row() (in module unidec.batch) set_resize() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) set_row_merge() (in module unidec.batch) set_row_values() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) set_scan_info() (unidec.IsoDec.match.IsoDecConfig method) set_tickcolor() (unidec.modules.plotting.PlotBase.PlotBase method) set_timepad_index() (unidec.modules.HTEng.HTEng method) set_tolerance() (unidec.modules.masstools.MassSelection method) set_values_to_gui() (unidec.modules.gui_elements.PlotControlsPanel.PlotControlsPanel method) set_xlim() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) set_ylim() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) set_zoomvals() (unidec.modules.plotting.PlotBase.PlotBase method) setUp() (unidec.metaunidec.test_MUD.TestGUI class method) setup_data() (unidec.IsoDec.IsoGen.isogen_base.IsoGenEngineBase method) setup_demultiplex() (unidec.modules.HTEng.HTEng method) setup_filenames() (unidec.metaunidec.mudeng.MetaUniDec method) setup_frame() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) setup_ft() (unidec.modules.HTEng.HTEng method) setup_ht() (unidec.modules.HTEng.HTEng method) setup_main_panel() (unidec.IsoDec.IDGUI.IsoDecView.IsoDecView method) (unidec.modules.gui_elements.CDWindow.CDMainwindow method) (unidec.modules.mainwindow.Mainwindow method) setup_model() (unidec.IsoDec.IsoGen.isogen_base.IsoGenModelBase method) (unidec.IsoDec.models.PhaseModel method) setup_msmooth() (unidec.modules.CDEng.UniDecCD method) setup_panel() (unidec.modules.CDCal.CDCalDialog method) (unidec.modules.IM_windows.IMTools method)

setup_peaks() (unidec.engine.UniDec method) (unidec.metaunidec.mudstruct.Spectrum method) setup_shortcuts() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) setup_tab_box() (in module unidec.modules.miscwindows) setup_tool_tips() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) setup_training() (unidec.IsoDec.IsoGen.isogen_base.IsoGenModelBase method) (unidec.IsoDec.models.PhaseModel method) setup_window() (unidec.metaunidec.ultrameta.BarGraphWindow method) setup_window_generic() (unidec.metaunidec.ultrameta.BarGraphWindow method) setup_zoom() (unidec.modules.plotting.PlotBase.PlotBase method) (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) setup_zsmooth() (unidec.modules.CDEng.UniDecCD method) setupmainpanel() (unidec.metaunidec.mudview.Mainwindow method) SetupModel() (unidec.modules.UniFit.KDmodel method) SetupModelAgg() (unidec.modules.UniFit.KDmodel method) shade_plots() (unidec.DataCollector.DataCollector method) Shell (class in unidec.Launcher) show_all_columns() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) show_columns_by_keyword() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) showPopupMenu() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.waters_import_wizard.import_wizard_grid.WizardGrid method) shrink_all_figures() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) shrink_figure() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) sig_fit() (in module unidec.modules.fitting) sim_dist() (unidec.modules.CDEng.UniDecCD method) simchargefit() (in module unidec.tools) simp_charge() (in module unidec.IsoDec.datatools) simp_convert() (unidec.modules.CDEng.UniDecCD method) simp_string_to_value() (in module unidec.tools) simple_extract() (in module unidec.tools) simple_mass_defect() (in module unidec.tools) simple_params() (in module unidec.modules.MassSpecBuilder) simple_spectrum() (in module unidec.modules.MassSpecBuilder) simple_spectrum2() (in module unidec.modules.MassSpecBuilder) single_cwt() (in module unidec.tools) SingleInputDialog (class in unidec.modules.miscwindows) SingleScanImporter (class in unidec.UniDecImporter.SingleScanImporter) site_match() (in module unidec.modules.matchtools) sitematch_to_excel() (in module unidec.modules.matchtools) sitematch_to_target() (in module unidec.modules.matchtools) size_handler() (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) SKIMMER (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) SKIMMER_LENS (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) slopefunc() (in module unidec.modules.CDEng) smartdecode() (in module unidec.tools) smash() (in module unidec.tools) smash2d() (in module unidec.tools) SmashListCrtl (class in unidec.modules.ManualSelectionWindow) SmashListCtrlPanel (class in unidec.modules.ManualSelectionWindow) SmashSelection (class in unidec.modules.ManualSelectionWindow) smooth_2d() (in module unidec.modules.IM_functions) sneaky_resize() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.waters_import_wizard.import_wizard_grid.WizardGrid method) softmax() (in module unidec.modules.CDEng) solve_for_mass() (in module unidec.tools) SOLVENT_DELAY (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) SONAR_ENABLED (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) sort_by_column() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) sort_by_scan_order() (in module unidec.IsoDec.msalign_export) sort_by_selected_column() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) sort_sitematches_by() (in module unidec.modules.matchtools) sortarray() (in module unidec.modules.UniFit) SOURCE_APERTURE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) SOURCE_CODE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) SOURCE_REGION1 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) SOURCE_REGION2 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) SOURCE_TEMPERATURE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) SPARE1 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) SPARE2 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) SPARE3 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) SPARE4 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) SPARE5 (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) sparse() (in module unidec.tools) special_clip() (in module unidec.modules.plotting.ZoomCommon) Spectrum (class in unidec.metaunidec.mudstruct) split_and_strip() (in module unidec.modules.waters_import_wizard.data_importer) splitdis() (in module unidec.modules.fitting) splitdis_fit() (in module unidec.modules.fitting) SpreadsheetFrame (class in unidec.modules.isolated_packages.spreadsheet) SpreadsheetPanel (class in unidec.modules.isolated_packages.spreadsheet) start() (unidec.modules.unidec_presbase.UniDecPres method) start_at_iso() (in module unidec.tools) startindex (unidec.IsoDec.c_interface.MPStruct attribute) STEERING (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) stepmax() (in module unidec.tools) stickconv() (in module unidec.tools) sticks_only() (in module unidec.tools) string_to_int() (in module unidec.tools) string_to_value() (in module unidec.tools) strip_char_from_string() (in module unidec.tools) sub_div() (unidec.modules.unidec_presbase.UniDecPres method) sub_div_window() (unidec.modules.unidec_presbase.UniDecPres method) subdiv() (unidec.modules.SubDiv.SubDivFrame method) SubDivFrame (class in unidec.modules.SubDiv) SUBMITTER (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) subtract_and_divide() (in module unidec.tools) subtract_complex_2d() (in module unidec.modules.IM_functions) subtract_matched_centroid_range() (in module unidec.IsoDec.datatools) sum_masses() (unidec.metaunidec.mudeng.MetaUniDec method) sum_region() (unidec.metaunidec.image_plotter.ImagingWindow method) super_delete() (unidec.modules.nativez.ColorList method) switch_label() (unidec.modules.plotting.ZoomCommon.ZoomCommon method) SwoopDragEvent (class in unidec.modules.plotting.PlottingWindow)

T

TASK_CODE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) tearDown() (unidec.metaunidec.test_MUD.TestGUI method) TEMP_COEFFICIENT (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) TEMP_CORRECTION (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) test_all_scans() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_auto_MS() (unidec.metaunidec.test_MUD.TestGUI method) test_avg_scan_norange() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_avg_scan_scanrange() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_avg_scan_timerange() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_avg_time_norange() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_centroided() (in module unidec.tools) test_check_centroided() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_flip() (unidec.metaunidec.test_MUD.TestGUI method) test_full_avg_scan() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_get_cdms() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_get_imms_avg_scan() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_get_imms_scan() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_get_ms_order() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_get_polarity() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_get_scans_times() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_new_file() (unidec.metaunidec.test_MUD.TestGUI method) test_presets_resets() (unidec.metaunidec.test_MUD.TestGUI method) test_repeat_avg() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_single_scan() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_tic() (unidec.UniDecImporter.ImportTests.ImporterTests method) test_unidec_paths() (unidec.metaunidec.test_MUD.TestGUI method) TestGUI (class in unidec.metaunidec.test_MUD) TestWindow (class in unidec.modules.isolated_packages.preset_manager) textremove() (unidec.modules.plotting.PlotBase.PlotBase method) ThermoImporter (class in unidec.UniDecImporter.Thermo.Thermo) thrash_predict() (in module unidec.IsoDec.altdecon) thrash_predictor() (unidec.IsoDec.engine.IsoDecEngine method) (unidec.IsoDec.runtime.IsoDecRuntime method) tic_ht() (unidec.modules.HTEng.UniChromCDEng method) TIC_TRACE_A (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) TIC_TRACE_B (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) time_range() (unidec.UniDecImporter.Agilent.MZFILE.MZFile method) (unidec.UniDecImporter.Thermo.RawFileReader.RawFileReader method)

to_array() (unidec.modules.unidecstructure.ChromatogramContainer method) to_df() (unidec.IsoDec.match.MatchedCollection method) (unidec.modules.hramtools.HRAMResult method) (unidec.modules.peakstructure.Peaks method) to_html_collapsible() (in module unidec.modules.html_writer) to_html_paragraph() (in module unidec.modules.html_writer) to_mass_spectrum() (unidec.IsoDec.match.MatchedCollection method) to_row() (unidec.modules.unidecstructure.Chromatogram method) TOF (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) TOF_APERTURE (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) tofloat() (in module unidec.modules.gui_elements.peaklistsort) ToString() (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawProcessor method) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawReader method) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxStringHandler method) TOTAL_ION_CURRENT (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) train() (unidec.IsoDec.IsoGen.isogen_base.IsoGenEngineBase method) train_model() (unidec.IsoDec.engine.IsoDecEngine method) (unidec.IsoDec.IsoGen.isogen_base.IsoGenModelBase method) (unidec.IsoDec.models.PhaseModel method) train_multiple() (unidec.IsoDec.IsoGen.isogen_base.IsoGenEngineBase method) transform() (unidec.modules.CDEng.UniDecCD method) transform_array() (unidec.modules.HTEng.UniChromCDEng method) transform_dt_ccs_array() (unidec.modules.HTEng.UniChromCDEng method) transform_mzmass() (unidec.modules.CDEng.UniDecCD method) transform_stacks() (unidec.modules.HTEng.UniChromCDEng method) translate_config() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) translate_id_config() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) translate_pks() (unidec.IsoDec.IsoDecGUI.IsoDecPres method) translate_selection() (unidec.modules.gui_elements.HTCD_ListCtrls.YValueListCtrl method) TRANSPORT_RF (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) TRANSPORTDC (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) traverse_to_unidec() (in module unidec.tools) TreeCtrl (class in unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl) (class in unidec.modules.waters_import_wizard.import_wizard_treectrl) TreeCtrlPanel (class in unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl) (class in unidec.modules.waters_import_wizard.import_wizard_treectrl)

U

undo() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.unidec_enginebase.UniDecEngine method) UniChromCDApp (class in unidec.UniChromCD) UniChromCDEng (class in unidec.modules.HTEng) unidec module UniDec (class in unidec.engine) unidec.batch module unidec.DataCollector module unidec.engine module unidec.GUniDec module unidec.ImportWizard module unidec.IsoDec module unidec.IsoDec.altdecon module unidec.IsoDec.c_interface module unidec.IsoDec.datatools module unidec.IsoDec.encoding module unidec.IsoDec.engine module unidec.IsoDec.IDGUI module unidec.IsoDec.IDGUI.IsoDecControls module unidec.IsoDec.IDGUI.IsoDecMenu module unidec.IsoDec.IDGUI.IsoDecView module unidec.IsoDec.IsoDecGUI module unidec.IsoDec.IsoGen module unidec.IsoDec.IsoGen.isogen_base module unidec.IsoDec.IsoGen.isogen_tools module unidec.IsoDec.isogenwrapper module unidec.IsoDec.match module unidec.IsoDec.models module unidec.IsoDec.msalign_export module unidec.IsoDec.oldisodecfunctions module unidec.IsoDec.plots module unidec.IsoDec.runtime module unidec.IsoDec.trainingdata module unidec.Launcher module unidec.MetaUniDec module unidec.metaunidec module unidec.metaunidec.gui_elements module unidec.metaunidec.gui_elements.list_ctrls module unidec.metaunidec.gui_elements.ud_cont_meta module unidec.metaunidec.gui_elements.ud_menu_meta module unidec.metaunidec.gui_elements.um_list_ctrl module unidec.metaunidec.image_plotter module unidec.metaunidec.imzml_reader module unidec.metaunidec.meta_import_wizard module unidec.metaunidec.meta_import_wizard.meta_data_importer module unidec.metaunidec.meta_import_wizard.meta_import_wizard module unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid module unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl module unidec.metaunidec.meta_import_wizard.MetaTagTypes module unidec.metaunidec.metafft module unidec.metaunidec.mudeng module unidec.metaunidec.mudhelp module unidec.metaunidec.mudstruct module unidec.metaunidec.mudview module unidec.metaunidec.test_MUD module unidec.metaunidec.ultrameta module unidec.modules module unidec.modules.AutocorrWindow module unidec.modules.biopolymertools module unidec.modules.CDCal module unidec.modules.CDEng module unidec.modules.ChromEng module unidec.modules.DoubleDec module unidec.modules.Extract2D module unidec.modules.fft_window module unidec.modules.fitting module unidec.modules.GridDecon module unidec.modules.GridDecon2 module unidec.modules.gui_elements module unidec.modules.gui_elements.CD_controls module unidec.modules.gui_elements.CDMenu module unidec.modules.gui_elements.CDWindow module unidec.modules.gui_elements.ChromWindow module unidec.modules.gui_elements.HTCD_ListCtrls module unidec.modules.gui_elements.mainwindow_base module unidec.modules.gui_elements.peaklistsort module unidec.modules.gui_elements.PlotControlsPanel module unidec.modules.gui_elements.ud_controls module unidec.modules.gui_elements.ud_menu module unidec.modules.hdf5_tools module unidec.modules.hramtools module unidec.modules.HTEng module unidec.modules.html_writer module unidec.modules.IM_functions module unidec.modules.IM_windows module unidec.modules.isolated_packages module unidec.modules.isolated_packages.biopolymer_calculator module unidec.modules.isolated_packages.FileDialogs module unidec.modules.isolated_packages.MD_compare module unidec.modules.isolated_packages.MD_Fitter module unidec.modules.isolated_packages.mql_tool module unidec.modules.isolated_packages.preset_manager module unidec.modules.isolated_packages.score_window module unidec.modules.isolated_packages.spreadsheet module unidec.modules.isolated_packages.texmaker module unidec.modules.isotopetools module unidec.modules.mainwindow module

unidec.modules.ManualSelectionWindow module unidec.modules.MassDefectExtractor module unidec.modules.MassDefects module unidec.modules.MassFitter module unidec.modules.MassSpecBuilder module unidec.modules.masstools module unidec.modules.matchtools module unidec.modules.miscwindows module unidec.modules.NanodiscBuilder module unidec.modules.nativez module unidec.modules.peakstructure module unidec.modules.peakwidthtools module unidec.modules.plotting module unidec.modules.plotting.ColorPlot module unidec.modules.plotting.NoZoomSpan module unidec.modules.plotting.plateplot module unidec.modules.plotting.plot1d module unidec.modules.plotting.plot2d module unidec.modules.plotting.plot3d module unidec.modules.plotting.plot_waterfall module unidec.modules.plotting.PlotAnimations module unidec.modules.plotting.PlotBase module unidec.modules.plotting.PlottingWindow module unidec.modules.plotting.ZoomBox module unidec.modules.plotting.ZoomCommon module unidec.modules.plotting.ZoomSpan module unidec.modules.SubDiv module unidec.modules.unidec_enginebase module unidec.modules.unidec_presbase module unidec.modules.unidecstructure module unidec.modules.UniFit module unidec.modules.waters_import_wizard module unidec.modules.waters_import_wizard.data_importer module unidec.modules.waters_import_wizard.get_data_wrapper module unidec.modules.waters_import_wizard.import_wizard_grid module unidec.modules.waters_import_wizard.import_wizard_treectrl module unidec.modules.waters_import_wizard.TagTypes module unidec.tools module unidec.UniChrom module unidec.UniChromCD module unidec.UniDecCD module unidec.UniDecImporter module unidec.UniDecImporter.Agilent module unidec.UniDecImporter.Agilent.AgilentImporter module unidec.UniDecImporter.Agilent.MZFILE module unidec.UniDecImporter.FileParser module unidec.UniDecImporter.I2MS module unidec.UniDecImporter.I2MS.I2MS module unidec.UniDecImporter.Importer module unidec.UniDecImporter.ImporterFactory module unidec.UniDecImporter.ImportTests module unidec.UniDecImporter.ImportTools module unidec.UniDecImporter.MZML module unidec.UniDecImporter.MZML.mzML module unidec.UniDecImporter.MZXML module unidec.UniDecImporter.MZXML.mzXML module unidec.UniDecImporter.SingleScanImporter module unidec.UniDecImporter.Thermo module unidec.UniDecImporter.Thermo.RawFileReader module unidec.UniDecImporter.Thermo.Thermo module unidec.UniDecImporter.Waters module unidec.UniDecImporter.Waters.MassLynxRawChromatogramReader module unidec.UniDecImporter.Waters.MassLynxRawInfoReader module unidec.UniDecImporter.Waters.MassLynxRawReader module unidec.UniDecImporter.Waters.MassLynxRawScanReader module unidec.UniDecImporter.Waters.Waters module unidec.UPP module unidec_call() (in module unidec.tools) unidec_imports() (unidec.engine.UniDec method) unidec_parameters() (unidec.metaunidec.mudhelp.HelpDlg method) UniDecApp (class in unidec.GUniDec) (class in unidec.MetaUniDec) UniDecBatchProcessor (class in unidec.batch) UniDecCD (class in unidec.modules.CDEng) UniDecCDApp (class in unidec.UniDecCD) UniDecConfig (class in unidec.modules.unidecstructure) UniDecEngine (class in unidec.modules.unidec_enginebase) UniDecLauncher (class in unidec.Launcher) UniDecPres (class in unidec.modules.unidec_presbase) UNINITALISED (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxBaseType attribute) UNINITIALISED (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) unsparse() (in module unidec.tools) update() (unidec.metaunidec.image_plotter.ImagingWindow method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.nativez.NativeZ method) (unidec.modules.plotting.NoZoomSpan.NoZoomSpan method) (unidec.modules.plotting.PlotAnimations.AnimationWindow method) (unidec.modules.plotting.ZoomBox.ZoomBox method) (unidec.modules.plotting.ZoomSpan.ZoomSpan method) update_background() (unidec.modules.plotting.NoZoomSpan.NoZoomSpan method) (unidec.modules.plotting.ZoomCommon.ZoomCommon method) update_config() (unidec.metaunidec.ultrameta.DataCollector method) update_demultiplex_mode() (unidec.modules.gui_elements.CD_controls.main_controls method) update_framerate() (unidec.modules.plotting.PlotAnimations.AnimationWindow method) update_get() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) update_gui() (unidec.metaunidec.ultrameta.DataCollector method) update_hdf5() (unidec.metaunidec.ultrameta.DataCollector method) (unidec.UniChrom.ChromApp method) update_history() (unidec.modules.unidec_enginebase.UniDecEngine method) update_list() (unidec.modules.nativez.NativeZ method) update_plot() (unidec.modules.plotting.PlotAnimations.AnimationWindow method) update_prethresh() (unidec.modules.gui_elements.CD_controls.main_controls method) update_progress() (unidec.UPP.UPPApp method) update_quick_controls() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) update_recent() (unidec.IsoDec.IDGUI.IsoDecMenu.main_menu method) (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) update_set() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) update_style() (unidec.modules.plotting.PlotBase.PlotBase method) update_var_array() (unidec.metaunidec.mudstruct.MetaDataSet method) UPP_check_peaks() (in module unidec.modules.matchtools) UPPApp (class in unidec.UPP) USE_LOCKMASS_CORRECTION (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) USER_NAME (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxHeaderItem attribute) USETEMP_CORRECTION (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxScanItem attribute) uv_trace() (unidec.UniDecImporter.Agilent.MZFILE.MZFile method)

V

verbose (unidec.IsoDec.c_interface.IDConfig attribute) (unidec.IsoDec.c_interface.IDSettings attribute) version (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawProcessor attribute) (unidec.UniDecImporter.Waters.MassLynxRawReader.MassLynxRawReader attribute)

voigt() (in module unidec.modules.fitting) voigt_fit() (in module unidec.modules.fitting)

W

waplot() (unidec.modules.DoubleDec.DoubleDec method) warn() (unidec.modules.unidec_presbase.UniDecPres method) waterfall() (unidec.modules.plotting.plot_waterfall.Waterfall3DPlot method) Waterfall3DPlot (class in unidec.modules.plotting.plot_waterfall) WaterfallFrame (class in unidec.modules.plotting.plot_waterfall) WatersDataImporter (class in unidec.UniDecImporter.Waters.Waters) weighted_avg() (in module unidec.tools) weighted_std() (in module unidec.tools) weighted_std_2() (in module unidec.modules.fitting) WeightedAvgs() (unidec.modules.DoubleDec.DoubleDec method) win_fft_diff() (in module unidec.tools) win_fft_grid() (in module unidec.tools) win_fft_grid_single() (in module unidec.tools) windowed_fft() (in module unidec.tools) windowed_fft_single() (in module unidec.tools) within_ppm() (in module unidec.tools)

WizardGrid (class in unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid) (class in unidec.modules.waters_import_wizard.import_wizard_grid) wrap_to_grid() (in module unidec.modules.html_writer) write_data() (unidec.modules.plotting.PlotBase.PlotBase method) write_hdf5() (unidec.metaunidec.mudstruct.Spectrum method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidecstructure.DataContainer method) (unidec.modules.unidecstructure.UniDecConfig method) write_ms1_msalign() (in module unidec.IsoDec.msalign_export) write_ms2_msalign() (in module unidec.IsoDec.msalign_export) write_peaks() (unidec.batch.UniDecBatchProcessor method) write_to_hdf5() (unidec.metaunidec.imzml_reader.Imzml_Reader method) write_to_html() (in module unidec.modules.html_writer) write_to_imzML() (unidec.metaunidec.mudeng.MetaUniDec method) write_to_recent() (unidec.modules.unidec_presbase.UniDecPres method) write_xlsx() (unidec.batch.UniDecBatchProcessor method)

X

xic() (unidec.UniDecImporter.Agilent.MZFILE.MZFile method)

XValueListCtrl (class in unidec.DataCollector) (class in unidec.metaunidec.gui_elements.um_list_ctrl)

Y

YValueListCtrl (class in unidec.DataCollector) (class in unidec.metaunidec.gui_elements.list_ctrls) (class in unidec.metaunidec.gui_elements.um_list_ctrl) (class in unidec.modules.gui_elements.HTCD_ListCtrls)

Z

z (unidec.IsoDec.c_interface.MPStruct attribute) zip_folder() (in module unidec.tools) zipdir() (in module unidec.tools) Zoffset (class in unidec.modules.nativez) ZoomBox (class in unidec.modules.plotting.ZoomBox) ZoomCommon (class in unidec.modules.plotting.ZoomCommon)

zoomout() (unidec.modules.plotting.PlotBase.PlotBase method) (unidec.modules.plotting.PlottingWindow.PlottingWindowBase method) (unidec.modules.plotting.ZoomBox.ZoomBox method) (unidec.modules.plotting.ZoomSpan.ZoomSpan method) ZoomSpan (class in unidec.modules.plotting.ZoomSpan) zscore_threshold (unidec.IsoDec.c_interface.IDSettings attribute)