Index

A

add_children() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.tims_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) add_chrom_peaks() (unidec.modules.ChromEng.ChromEngine method) add_chromatogram() (unidec.modules.unidecstructure.ChromatogramContainer method) add_col() (unidec.modules.isolated_packages.spreadsheet.SpreadsheetPanel method) add_cols() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) add_data() (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) add_dataset() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.tims_import_wizard.import_wizard_grid.WizardGrid method) add_eic() (unidec.UniChromCD.UniChromCDApp method) add_empty_line() (unidec.modules.nativez.ColorList method) add_file() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.modules.UniList.UniListApp method) add_files() (unidec.MetaUniDec.UniDecApp method) (unidec.UPP.UPPApp method) add_history() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) add_legend() (unidec.modules.PlotBase.PlotBase method) add_line() (unidec.DataCollector.XValueListCtrl method) (unidec.DataCollector.YValueListCtrl method) (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.XValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.YValueListCtrl method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.ManualSelectionWindow.ManualListCrtl method) (unidec.modules.ManualSelectionWindow.SmashListCrtl method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.masstools.MassListCtrl method) (unidec.modules.masstools.OligomerListCtrl method) (unidec.modules.nativez.ColorList method) (unidec.modules.UniList.UDListCtrl method) add_line_to_ss() (unidec.modules.masstools.MassSelection method) add_list_times() (unidec.modules.ChromEng.ChromEngine method) add_manual_selection() (unidec.modules.ChromEng.ChromEngine method) add_mass_eic() (unidec.UniChromCD.UniChromCDApp method) add_peaks() (unidec.modules.peakstructure.Peaks method) (unidec.modules.PlotAnimations.AnimationWindow method) add_peaks_mass() (unidec.modules.PlotAnimations.AnimationWindow method) add_peaks_mz() (unidec.modules.PlotAnimations.AnimationWindow method)

add_rect() (unidec.modules.PlotBase.PlotBase method) add_regular_times() (unidec.modules.ChromEng.ChromEngine method) add_root() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.tims_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) add_rows() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) add_sliding_window() (unidec.modules.ChromEng.ChromEngine method) add_title() (unidec.modules.PlotBase.PlotBase method) add_to_common_masses() (unidec.modules.masstools.MassSelection method) add_to_recent() (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) additional_filters() (unidec.metaunidec.mudhelp.HelpDlg method) additional_plotting() (unidec.metaunidec.mudhelp.HelpDlg method) AdditionalParameters (class in unidec.modules.miscwindows) addtext() (unidec.modules.PlotBase.PlotBase method) adduct_mass() (in module unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator) after_pick_peaks() (unidec.GUniDec.UniDecApp method) after_unidec_run() (unidec.GUniDec.UniDecApp method) animate_help() (unidec.metaunidec.mudhelp.HelpDlg method) AnimationWindow (class in unidec.modules.PlotAnimations) apply_ratio() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) array_to_html() (in module unidec.modules.html_writer) attrs_to_df() (unidec.metaunidec.mudstruct.MetaDataSet method) auto() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) auto_format() (unidec.modules.peakstructure.Peaks method) auto_from_wizard() (in module unidec.metaunidec.meta_import_wizard.meta_data_importer) (in module unidec.modules.tims_import_wizard.data_importer) auto_gzip() (in module unidec.modules.mzMLimporter) auto_import_help() (unidec.metaunidec.mudhelp.HelpDlg method) auto_match_help() (unidec.metaunidec.mudhelp.HelpDlg method) auto_noise_level() (in module unidec.tools) auto_peak_width() (in module unidec.tools) auto_polarity() (unidec.modules.unidec_enginebase.UniDecEngine method) auto_refresh_stop() (unidec.modules.unidec_presbase.UniDecPres method) autocorr() (in module unidec.tools) autocorr_help() (unidec.metaunidec.mudhelp.HelpDlg method) autocorrelation() (unidec.engine.UniDec method) AutocorrWindow (class in unidec.modules.AutocorrWindow) autointegrate() (unidec.engine.UniDec method) autorun() (unidec.engine.UniDec method) autoscale_column_width() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) average_bin_size() (in module unidec.tools) AverageHarmFun() (in module unidec.iFAMS.iFAMSfun)

B

BarGraphWindow (class in unidec.metaunidec.ultrameta) barplottop() (unidec.modules.plot1d.Plot1dBase method) barplottoperrors() (unidec.modules.plot1d.Plot1dBase method) baseline_help() (unidec.metaunidec.mudhelp.HelpDlg method) batch_dd() (in module unidec.modules.DoubleDec) batch_extract() (unidec.metaunidec.mudeng.MetaUniDec method) batch_help() (unidec.metaunidec.mudhelp.HelpDlg method) batch_run() (unidec.UniChrom.ChromApp method) batch_run_unidec() (unidec.metaunidec.mudeng.MetaUniDec method) batch_set_config() (unidec.metaunidec.mudeng.MetaUniDec method) before_open() (unidec.modules.CDEng.UniDecCD method) bind_changes() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) bind_peakpanel() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) binomial() (in module unidec.modules.fitting) binomial_fit() (in module unidec.modules.fitting)

BiopolymerFrame (class in unidec.modules.isolated_packages.biopolymer_calculator) blur() (in module unidec.modules.GridDecon) (in module unidec.modules.GridDecon2) BootMin() (in module unidec.modules.UniFit) BootMinWorker() (in module unidec.modules.UniFit) Bootstrap() (unidec.modules.UniFit.KDmodel method) broaden() (in module unidec.tools) button1() (unidec.Launcher.Lview method) button10() (unidec.Launcher.Lview method) button11() (unidec.Launcher.Lview method) button2() (unidec.Launcher.Lview method) button3() (unidec.Launcher.Lview method) button4() (unidec.Launcher.Lview method) button5() (unidec.Launcher.Lview method) button6() (unidec.Launcher.Lview method) button7() (unidec.Launcher.Lview method) button8() (unidec.Launcher.Lview method) button9() (unidec.Launcher.Lview method)

C

cal_data() (in module unidec.tools) calc_averagine_isotope_dist() (in module unidec.modules.isotopetools) calc_bispecific_correct() (in module unidec.modules.matchtools) calc_dna_mass() (in module unidec.modules.biopolymertools) calc_fold_changes_all() (in module unidec.LipiDec.SkyQuant) calc_fromula_from_mass() (in module unidec.modules.hramtools) calc_FWHM() (in module unidec.tools) calc_linear_ccs() (in module unidec.modules.IM_functions) calc_linear_ccsconst() (in module unidec.modules.IM_functions) calc_linear_dt() (in module unidec.modules.IM_functions) calc_local_mins() (in module unidec.tools) calc_native_ccs() (in module unidec.modules.IM_functions) calc_pairs() (in module unidec.modules.matchtools) calc_pep_mass() (in module unidec.modules.biopolymertools) calc_rna_mass() (in module unidec.modules.biopolymertools) calc_swoop() (in module unidec.tools) calc_tail_diff() (in module unidec.LipiDec.AddFeaturestoDF) calc_twave_dt_linear() (in module unidec.modules.IM_functions) calc_twave_dt_log() (in module unidec.modules.IM_functions) calc_twave_dt_power() (in module unidec.modules.IM_functions) calculate() (unidec.modules.isolated_packages.biopolymer_calculator.BiopolymerFrame method) cc() (in module unidec.modules.plateplot) (in module unidec.modules.plot_waterfall) cconv() (in module unidec.tools) cconv2() (in module unidec.modules.DoubleDec) cconv2D_preB() (in module unidec.modules.CDEng) ccs_transform_stacks() (unidec.modules.HTEng.UniDecCDHT method) CDCalDialog (class in unidec.modules.CDCal) CDListCtrl (class in unidec.modules.CDCal) CDListCtrlPanel (class in unidec.modules.CDCal) CDMainwindow (class in unidec.modules.gui_elements.CDWindow) CDMenu (class in unidec.modules.gui_elements.CDMenu) center_of_mass() (in module unidec.tools) (unidec.engine.UniDec method) change() (unidec.modules.plot_waterfall.WaterfallFrame method) change_type() (unidec.modules.plateplot.PlateFrame method) (unidec.modules.plot_waterfall.WaterfallFrame method) (unidec.modules.SubDiv.SubDivFrame method) charge() (in module unidec.iFAMS.iFAMSfun) check_badness() (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.modules.unidecstructure.UniDecConfig method) check_cmaps() (unidec.DataCollector.DataCollector method) check_for_floatable() (in module unidec.batch) check_for_value() (in module unidec.batch) check_for_word_in_keys() (in module unidec.batch) check_isomode() (unidec.modules.unidec_enginebase.UniDecEngine method) check_new() (unidec.modules.unidecstructure.UniDecConfig method) check_only() (unidec.LipiDec.LipyDec.LipyDecWindow method) check_only2() (unidec.LipiDec.LipyDec.LipyDecWindow method) check_only3() (unidec.LipiDec.LipyDec.LipyDecWindow method) check_string_for_seq() (in module unidec.modules.matchtools) checkoverlap() (in module unidec.modules.ManualSelectionWindow) ChromApp (class in unidec.UniChrom) Chromatogram (class in unidec.modules.unidecstructure) ChromatogramContainer (class in unidec.modules.unidecstructure) ChromDropTarget (class in unidec.modules.gui_elements.ChromWindow) ChromEngine (class in unidec.modules.ChromEng) ChromWindow (class in unidec.modules.gui_elements.ChromWindow) clean_name() (in module unidec.LipiDec.AddFeaturestoDF) cleanup_db() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) cleanup_recent_file() (unidec.modules.unidec_presbase.UniDecPres method) clear() (unidec.metaunidec.mudeng.MetaUniDec method) (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.modules.ManualSelectionWindow.ManualListCrtl method) (unidec.modules.ManualSelectionWindow.SmashListCrtl method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.masstools.MassListCtrl method) (unidec.modules.masstools.MatchListCtrl method) (unidec.modules.masstools.OligomerListCtrl method) (unidec.modules.unidecstructure.ChromatogramContainer method) clear_all() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.tims_import_wizard.import_wizard_grid.WizardGrid method) (unidec.UPP.UPPApp method) clear_all_plots() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) clear_arrays() (unidec.modules.HTEng.UniDecCDHT method) clear_frame() (unidec.modules.PlottingWindow.NetworkFrame method) clear_history() (unidec.modules.unidec_enginebase.UniDecEngine method)

clear_list() (unidec.DataCollector.XValueListCtrl method) (unidec.DataCollector.YValueListCtrl method) (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.XValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.YValueListCtrl method) (unidec.modules.AutocorrWindow.CorrListCtrl method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.gui_elements.HTCD_ListCtrls.YValueListCtrl method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.isolated_packages.score_window.ScoreListCtrl method) (unidec.modules.UniList.UDListCtrl method) clear_plot() (unidec.modules.PlotBase.PlotBase method) clear_plots() (unidec.modules.gui_elements.ChromWindow.ChromWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) clip_all() (in module unidec.modules.isolated_packages.ZoomCommon) clip_none() (in module unidec.modules.isolated_packages.ZoomCommon) Clone() (unidec.modules.isolated_packages.spreadsheet.CutomGridCellAutoWrapStringRenderer method) close() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) close_ok() (unidec.modules.isolated_packages.biopolymer_calculator.BiopolymerFrame method) closest() (in module unidec.modules.ManualSelectionWindow) color_by_score() (unidec.modules.peakstructure.Peaks method) color_class_checkbox() (unidec.LipiDec.LipyDec.LipyDecWindow method) color_column() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) color_columns() (unidec.UPP.UPPApp method) color_columns_by_keyword() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) color_item() (unidec.modules.masstools.MatchListCtrl method) color_length_checkbox() (unidec.LipiDec.LipyDec.LipyDecWindow method) color_map_array() (in module unidec.tools) color_unsat_checkbox() (unidec.LipiDec.LipyDec.LipyDecWindow method) ColorList (class in unidec.modules.nativez) ColorPlot2D (class in unidec.modules.ColorPlot) colorplotMD() (unidec.modules.plot1d.Plot1dBase method) column_labels() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.tims_import_wizard.import_wizard_grid.WizardGrid method) combine() (in module unidec.tools) combine_all() (in module unidec.tools) combine_scanpeaks() (unidec.metaunidec.mudeng.MetaUniDec method) CommonMasses (class in unidec.modules.masstools) commonprefix() (in module unidec.tools) CompareModels() (in module unidec.modules.UniFit) complex_poisson() (in module unidec.modules.fitting) compress_2d() (in module unidec.modules.IM_functions) config_export() (unidec.modules.unidecstructure.UniDecConfig method) config_import() (unidec.modules.unidecstructure.UniDecConfig method) construct_mol() (in module unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator) continuous_wavelet_transform() (in module unidec.tools) contourplot() (unidec.modules.plot2d.Plot2dBase method) conv() (in module unidec.modules.GridDecon) (in module unidec.modules.GridDecon2) conv_peak_shape_kernel() (in module unidec.tools) convert() (unidec.modules.CDEng.UniDecCD method) convert_stori() (unidec.modules.CDEng.UniDecCD method) convert_trace_to_ccs() (unidec.modules.HTEng.UniDecCDHT method) convolve_peaks() (unidec.engine.UniDec method) copy() (unidec.modules.isolated_packages.score_window.ScoreListCtrl method) (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.peakstructure.Peaks method) copy_config() (in module unidec.modules.unidec_enginebase) copy_to_clipboard() (unidec.modules.PlottingWindow.PlottingWindowBase method) (unidec.modules.unidec_presbase.UniDecPres method) correct_avg() (in module unidec.modules.isotopetools) correct_cycle_time() (unidec.modules.HTEng.HTEng method) correct_peaks() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) correctassignments() (in module unidec.modules.ManualSelectionWindow) correlation_integration() (in module unidec.tools) CorrListCtrl (class in unidec.modules.AutocorrWindow) CorrListCtrlPanel (class in unidec.modules.AutocorrWindow) create_chrom() (unidec.modules.HTEng.UniDecCDHT method) create_color_cycle() (in module unidec.tools) create_mass_axis() (unidec.modules.CDEng.UniDecCD method) create_timer() (unidec.modules.unidec_presbase.UniDecPres method) create_timer2() (unidec.modules.unidec_presbase.UniDecPres method) createcompareplot() (unidec.modules.fft_window.FFTWindow method) csv_reader() (unidec.metaunidec.mudeng.MetaUniDec method) CubePlot (class in unidec.modules.plot3d) cubeplot() (unidec.modules.plot3d.CubePlot method) cut() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) CutomGridCellAutoWrapStringRenderer (class in unidec.modules.isolated_packages.spreadsheet)

D

dar_calc() (in module unidec.modules.matchtools) data_extract() (in module unidec.tools) data_extract_grid() (in module unidec.tools) data_import_worker() (in module unidec.modules.tims_import_wizard.data_importer) data_processing() (unidec.metaunidec.mudhelp.HelpDlg method) datachop() (in module unidec.tools) DataCollector (class in unidec.DataCollector) (class in unidec.metaunidec.ultrameta) datacompsub() (in module unidec.tools) DataContainer (class in unidec.modules.unidecstructure) dataexport() (in module unidec.tools) dataexportbin() (in module unidec.tools) DataImporter (class in unidec.modules.data_reader) dataprep() (in module unidec.tools) (unidec.UniDecCD.UniDecCDApp method) datasimpsub() (in module unidec.tools) DCDropTarget (class in unidec.DataCollector) (class in unidec.metaunidec.gui_elements.um_list_ctrl) dd_core() (unidec.modules.DoubleDec.DoubleDec method) dd_import() (unidec.modules.DoubleDec.DoubleDec method) dd_prep() (unidec.modules.DoubleDec.DoubleDec method) dd_run() (unidec.modules.DoubleDec.DoubleDec method) decimal_formatter() (in module unidec.tools) decon_core() (unidec.modules.CDEng.UniDecCD method) decon_external_call() (unidec.modules.CDEng.UniDecCD method) deconvolve() (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) default_colormaps() (unidec.modules.unidecstructure.UniDecConfig method) default_decon_params() (unidec.modules.unidecstructure.UniDecConfig method)

default_file_names() (unidec.modules.unidecstructure.UniDecConfig method) default_high_res() (unidec.modules.unidecstructure.UniDecConfig method) default_isotopic_res() (unidec.modules.unidecstructure.UniDecConfig method) default_low_res() (unidec.modules.unidecstructure.UniDecConfig method) default_nanodisc() (unidec.modules.unidecstructure.UniDecConfig method) default_params() (unidec.modules.peakstructure.Peaks method) default_zero_charge() (unidec.modules.unidecstructure.UniDecConfig method) delete() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) delete_all() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) delete_cols() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) delete_rows() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) detect_coalescence() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) detectoreff() (in module unidec.tools) detectoreff_2d() (in module unidec.modules.IM_functions) detectoverlap() (in module unidec.modules.ManualSelectionWindow) df_to_html() (in module unidec.modules.html_writer) dict_to_html() (in module unidec.modules.html_writer) diffs_consecutive() (unidec.modules.peakstructure.Peaks method) diffs_from() (unidec.modules.peakstructure.Peaks method) double_fft_diff() (in module unidec.tools) DoubleDec (class in unidec.modules.DoubleDec) DoubleInputDialog (class in unidec.modules.miscwindows) Draw() (unidec.modules.isolated_packages.spreadsheet.CutomGridCellAutoWrapStringRenderer method) draw() (unidec.modules.plateplot.PlateFrame method) (unidec.modules.plot_waterfall.WaterfallFrame method) draw_graph() (in module unidec.modules.UniFit) draw_graph_structure() (in module unidec.modules.UniFit) draw_mz_curve() (unidec.modules.PlotBase.PlotBase method) dscore() (unidec.engine.UniDec method) DummyPanel (class in unidec.modules.masstools)

E

eic_ht() (unidec.modules.HTEng.UniChromHT method) (unidec.modules.HTEng.UniDecCDHT method) envelope_calc() (in module unidec.iFAMS.iFAMSfun) error_function() (in module unidec.modules.isolated_packages.MD_Fitter) (in module unidec.modules.MassFitter) error_function2() (in module unidec.modules.isolated_packages.MD_Fitter) errorbars() (unidec.modules.plot1d.Plot1dBase method) estimate_areas() (unidec.engine.UniDec method) estimate_FDR() (unidec.engine.UniDec method) EvtDriftType() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.tims_import_wizard.import_wizard_grid.WizardGrid method) exe_call() (in module unidec.tools) exe_mode() (unidec.modules.CDEng.UniDecCD method) exp_decay() (in module unidec.modules.fitting) exp_fit() (in module unidec.modules.fitting) export_arrays() (unidec.UniChromCD.UniChromCDApp method) export_config() (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) export_file() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) export_fits() (unidec.metaunidec.mudstruct.MetaDataSet method) export_gui_to_config() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.metaunidec.mudview.Mainwindow method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ChromWindow.ChromWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.gui_elements.ud_controls.main_controls method)

export_hdf5() (unidec.metaunidec.mudstruct.MetaDataSet method) export_params() (unidec.engine.UniDec method) (unidec.metaunidec.mudeng.MetaUniDec method) export_selection() (unidec.UniChrom.ChromApp method) export_spectra() (unidec.metaunidec.mudeng.MetaUniDec method) export_then_load() (unidec.ImportWizard.ImportWizard method) export_vars() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.metaunidec.mudstruct.MetaDataSet method) export_vars_dialog() (unidec.MetaUniDec.MetaUniDecBase method) extract() (in module unidec.modules.mzmlparse_auto) (unidec.metaunidec.image_plotter.ImagingWindow method) Extract() (unidec.modules.DoubleDec.DoubleDec method) extract() (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) (unidec.modules.nativez.NativeZ method) extract2() (unidec.metaunidec.image_plotter.ImagingWindow method) Extract2DPlot (class in unidec.modules.Extract2D) extract3() (unidec.metaunidec.image_plotter.ImagingWindow method) extract4() (unidec.metaunidec.image_plotter.ImagingWindow method) extract_from_data_matrix() (in module unidec.tools) extract_intensities() (unidec.modules.CDEng.UniDecCD method) extract_scans() (in module unidec.modules.mzmlparse_auto) extract_scans_multiple_files() (in module unidec.modules.mzmlparse_auto) extract_subdata() (unidec.modules.HTEng.UniDecCDHT method) extract_swoop_subdata() (unidec.modules.HTEng.UniDecCDHT method) extract_timepoints() (in module unidec.modules.mzmlparse_auto) extractall() (unidec.modules.Extract2D.Extract2DPlot method)

F

fake_log() (in module unidec.tools) fast_extract() (unidec.modules.nativez.NativeZ method) FD_gauss_wavelet() (in module unidec.tools) fft() (in module unidec.tools) fft_diff() (in module unidec.tools) fft_fun() (in module unidec.modules.CDEng) fft_help() (unidec.metaunidec.mudhelp.HelpDlg method) fft_process() (in module unidec.tools) (unidec.metaunidec.metafft.FFTWindow method) FFTFilter() (in module unidec.iFAMS.iFAMSfun) FFTWindow (class in unidec.metaunidec.metafft) (class in unidec.modules.fft_window) fig_to_html_mpld3() (in module unidec.modules.html_writer) file_dialog() (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) file_to_df() (in module unidec.modules.matchtools) FileNameDialog (class in unidec.modules.miscwindows) fill_down() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.tims_import_wizard.import_wizard_grid.WizardGrid method) fill_empty() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) fill_grid() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) fill_out_df() (in module unidec.LipiDec.AddFeaturestoDF) fill_out_df_names() (in module unidec.LipiDec.AddFeaturestoDF) fill_text_box() (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) filledplot() (unidec.modules.plot1d.Plot1dBase method) filter_centroid_all() (unidec.modules.CDEng.UniDecCD method) filter_centroid_const() (in module unidec.modules.CDEng) filter_indexes() (unidec.modules.hramtools.HRAMSearchSpace method) filter_int() (unidec.modules.CDEng.UniDecCD method) filter_mdist() (unidec.modules.CDEng.UniDecCD method) filter_mz() (unidec.modules.CDEng.UniDecCD method) filter_peaks() (unidec.engine.UniDec method) (unidec.metaunidec.mudeng.MetaUniDec method) filter_skyline() (in module unidec.LipiDec.SkyQuant) filter_z() (unidec.modules.CDEng.UniDecCD method) filter_zdist() (unidec.modules.CDEng.UniDecCD method)

FinalAvg() (in module unidec.iFAMS.iFAMSfun) find_active_plot() (unidec.LipiDec.LipyDec.LipyDecWindow method) find_alternates() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) find_basemods() (in module unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator) find_file() (in module unidec.batch) find_file_headers() (in module unidec.LipiDec.SkyQuant) find_good_species() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) find_initial_matches() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) find_isotope_matches() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) find_kernel_file() (in module unidec.tools) find_matches() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) find_missing_peaks() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) find_mouse_species() (unidec.LipiDec.LipyDec.LipyDecWindow method) find_std_class() (in module unidec.LipiDec.SkyQuant) FindBestModel() (unidec.modules.UniFit.KDmodel method) findend() (in module unidec.modules.UniFit) findmax() (in module unidec.iFAMS.iFAMSfun) findpaths() (in module unidec.modules.UniFit) fit() (unidec.modules.nativez.NativeZ method) fit_all_masses() (unidec.engine.UniDec method) fit_data() (unidec.metaunidec.mudeng.MetaUniDec method) fit_line() (in module unidec.modules.mzMLimporter) fit_peak() (in module unidec.modules.fitting) fix_double_zeros() (in module unidec.tools) fix_text_color() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) fix_textpos() (in module unidec.tools) fixlists() (in module unidec.modules.UniFit) fold_plot() (unidec.LipiDec.LipyDec.LipyDecWindow method) format_tag_name() (in module unidec.metaunidec.meta_import_wizard.MetaTagTypes) (in module unidec.modules.tims_import_wizard.TagTypes) Fourier() (in module unidec.iFAMS.iFAMSfun) fpop() (unidec.modules.unidec_presbase.UniDecPres method) ftdecon() (unidec.modules.HTEng.HTEng method) Ftest() (in module unidec.modules.UniFit) full_processing() (in module unidec.LipiDec.SkyQuant)

G

gaussfit() (in module unidec.modules.fitting) gaussian_backgroud_subtract() (in module unidec.tools) gen_html_report() (unidec.modules.unidec_enginebase.UniDecEngine method) gen_style_str() (in module unidec.modules.html_writer) generate_image() (unidec.metaunidec.mudeng.MetaUniDec method) generate_masses() (unidec.modules.hramtools.HRAMSearchSpace method) get_aa_mass() (in module unidec.modules.biopolymertools) get_active() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) get_alts() (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidecstructure.OligomerContainer method) get_angle() (unidec.modules.plot_waterfall.Waterfall3DPlot method) get_apex_mono_diff() (in module unidec.modules.isotopetools) get_attr() (unidec.metaunidec.mudstruct.MetaDataSet method) get_auto_peak_width() (unidec.modules.unidec_enginebase.UniDecEngine method) get_blank_axis() (unidec.modules.PlotBase.PlotBase method) get_bool() (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.modules.peakstructure.Peaks method) get_ccs_eic() (unidec.modules.HTEng.UniDecCDHT method) get_charge_peaks() (unidec.engine.UniDec method) get_chrom_peaks() (unidec.modules.ChromEng.ChromEngine method) get_class() (in module unidec.LipiDec.AddFeaturestoDF) get_col_headers() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) get_color_from_index() (in module unidec.tools) get_colors() (in module unidec.LipiDec.AddFeaturestoDF) (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.modules.unidecstructure.UniDecConfig method) get_config_dict() (unidec.modules.unidecstructure.UniDecConfig method) get_count() (in module unidec.LipiDec.Infusion.Formulas) get_cycle_time() (unidec.modules.HTEng.HTEng method) get_data() (in module unidec.modules.hdf5_tools) (unidec.metaunidec.imzml_reader.Imzml_Reader method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.data_reader.DataImporter method) (unidec.modules.gui_elements.HTCD_ListCtrls.YValueListCtrl method) (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) (unidec.modules.mzMLimporter.mzMLimporter method) (unidec.modules.mzXML_importer.mzXMLimporter method) get_data_fast_memory_heavy() (unidec.modules.mzMLimporter.mzMLimporter method) (unidec.modules.mzXML_importer.mzXMLimporter method) get_data_from_scans() (unidec.modules.ChromEng.ChromEngine method) get_data_from_spectrum() (in module unidec.modules.mzMLimporter) (in module unidec.modules.mzXML_importer) get_data_from_times() (unidec.modules.ChromEng.ChromEngine method) get_data_memory_safe() (unidec.modules.mzMLimporter.mzMLimporter method) (unidec.modules.mzXML_importer.mzXMLimporter method) get_dataset() (in module unidec.modules.hdf5_tools) get_df() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) get_dna_mass() (in module unidec.modules.biopolymertools) get_dts() (unidec.modules.mzMLimporter.mzMLimporter method) get_eic() (unidec.modules.HTEng.UniChromHT method) (unidec.modules.HTEng.UniDecCDHT method) get_engs() (unidec.modules.UniList.UniListApp method) get_file_path() (unidec.batch.UniDecBatchProcessor method) get_files() (in module unidec.modules.mzmlparse_auto) get_first_peak() (unidec.modules.HTEng.HTEng method) get_fit() (unidec.modules.CDEng.UniDecCD method) get_fit_linear() (unidec.modules.CDEng.UniDecCD method) get_fit_quadratic() (unidec.modules.CDEng.UniDecCD method) get_folder_path() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) get_from_gui() (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.UniChrom.ChromApp method) (unidec.UPP.UPPApp method) get_glyco_indexes() (in module unidec.tools) get_im_data() (unidec.modules.mzMLimporter.mzMLimporter method) get_im_data_from_spectrum() (in module unidec.modules.mzMLimporter) get_importer() (in module unidec.tools) get_inj_time() (unidec.modules.mzMLimporter.mzMLimporter method) get_inj_time_array() (unidec.modules.mzMLimporter.mzMLimporter method) get_internal_standards() (in module unidec.LipiDec.AddFeaturestoDF) get_items() (unidec.modules.masstools.OligomerListCtrl method) get_kd() (in module unidec.modules.Extract2D) get_limits() (unidec.modules.PlotBase.PlotBase method) get_linewidth() (unidec.modules.PlotBase.PlotBase method) get_list() (unidec.DataCollector.XValueListCtrl method) (unidec.DataCollector.YValueListCtrl method) (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.XValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.YValueListCtrl method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.ManualSelectionWindow.ManualListCrtl method) (unidec.modules.ManualSelectionWindow.SmashListCrtl method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.masstools.MassListCtrl method) (unidec.modules.masstools.MatchListCtrl method) (unidec.modules.masstools.OligomerListCtrl method) (unidec.modules.UniList.UDListCtrl method) get_longest_index() (in module unidec.modules.mzMLimporter) get_luminance() (in module unidec.tools) get_mass_data() (in module unidec.modules.hdf5_tools) get_mass_defects() (unidec.modules.peakstructure.Peaks method) get_mass_eic() (unidec.modules.HTEng.UniDecCDHT method) get_max_data2() (unidec.metaunidec.mudstruct.MetaDataSet method)

get_max_scans() (unidec.modules.data_reader.DataImporter method) (unidec.modules.mzMLimporter.mzMLimporter method) (unidec.modules.mzXML_importer.mzXMLimporter method) get_max_time() (in module unidec.tools) (unidec.modules.data_reader.DataImporter method) (unidec.modules.mzMLimporter.mzMLimporter method) (unidec.modules.mzXML_importer.mzXMLimporter method) get_maxes() (unidec.DataCollector.XValueListCtrl method) get_maxima() (unidec.modules.nativez.NativeZ method) get_metadata() (in module unidec.modules.hdf5_tools) get_minmax_times() (unidec.modules.ChromEng.ChromEngine method) get_mod_files() (unidec.batch.UniDecBatchProcessor method) get_mzrange() (in module unidec.modules.MassSpecBuilder) get_mzstack() (unidec.engine.UniDec method) get_num() (in module unidec.modules.hdf5_tools) get_overall_tails() (in module unidec.LipiDec.AddFeaturestoDF) get_param() (in module unidec.modules.hdf5_tools) get_peaks() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) get_png() (unidec.modules.PlotBase.PlotBase method) get_polarity() (in module unidec.tools) (unidec.modules.data_reader.DataImporter method) (unidec.modules.mzMLimporter.mzMLimporter method) (unidec.modules.mzXML_importer.mzXMLimporter method) get_preset_list() (unidec.modules.unidecstructure.UniDecConfig method) get_property() (unidec.modules.mzMLimporter.mzMLimporter method) get_resolution() (in module unidec.modules.mzMLimporter) get_rna_mass() (in module unidec.modules.biopolymertools) get_scans_from_times() (unidec.modules.data_reader.DataImporter method) (unidec.modules.mzMLimporter.mzMLimporter method) (unidec.modules.mzXML_importer.mzXMLimporter method) get_selected() (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) get_selected_cells() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) get_selected_rows() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) get_selection() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.masstools.CommonMasses method) get_site_df() (unidec.modules.masstools.MassSelection method) get_site_headers() (unidec.modules.masstools.MassSelection method) get_site_masses_names() (unidec.modules.masstools.MassSelection method) get_sitematch_list() (in module unidec.modules.matchtools) get_spectra() (unidec.metaunidec.mudstruct.MetaDataSet method) get_spectrum_peaks() (unidec.engine.UniDec method) get_started() (unidec.metaunidec.mudhelp.HelpDlg method) get_stat_code() (in module unidec.modules.tims_import_wizard.data_importer) get_stat_name() (in module unidec.modules.tims_import_wizard.data_importer) get_subs() (in module unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator) get_summed_match_intensities() (unidec.modules.unidec_enginebase.UniDecEngine method) get_svg() (unidec.modules.PlotBase.PlotBase method) get_swoop_eic() (unidec.modules.HTEng.UniDecCDHT method) get_swoop_mz_minmax() (in module unidec.tools) get_symbols() (in module unidec.LipiDec.AddFeaturestoDF) get_table() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) get_tic() (unidec.modules.data_reader.DataImporter method) (unidec.modules.HTEng.UniDecCDHT method) (unidec.modules.mzMLimporter.mzMLimporter method) (unidec.modules.mzXML_importer.mzXMLimporter method) get_time_range() (in module unidec.batch) get_times() (unidec.modules.ChromEng.ChromEngine method) get_times_from_scans() (unidec.modules.data_reader.DataImporter method) (unidec.modules.mzMLimporter.mzMLimporter method) (unidec.modules.mzXML_importer.mzXMLimporter method) get_tol() (unidec.batch.UniDecBatchProcessor method) get_tvalue() (in module unidec.tools) get_z_offset() (in module unidec.tools) get_zoomvals() (unidec.modules.PlotBase.PlotBase method) get_zrange() (in module unidec.modules.MassSpecBuilder) get_zstack() (unidec.engine.UniDec method) get_zvalue() (in module unidec.tools) GetBestSize() (unidec.modules.isolated_packages.spreadsheet.CutomGridCellAutoWrapStringRenderer method) GetDegenKD() (in module unidec.modules.UniFit) GetError() (in module unidec.modules.UniFit) GetFree() (in module unidec.modules.UniFit) getfromgui() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) (unidec.metaunidec.metafft.FFTWindow method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) (unidec.modules.MassDefects.MassDefectWindow method) GetLines() (in module unidec.modules.tims_import_wizard.data_importer) GetListCtrl() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) (unidec.modules.masstools.CommonMasses method) GetMaxes() (in module unidec.modules.isolated_packages.ZoomCommon) GetStart() (in module unidec.modules.isolated_packages.ZoomCommon) GetStartEndMass() (in module unidec.modules.tims_import_wizard.data_importer) Gmax2() (in module unidec.modules.CDEng) grab_data() (unidec.modules.data_reader.DataImporter method) (unidec.modules.i2ms_importer.I2MSImporter method) (unidec.modules.mzMLimporter.mzMLimporter method) (unidec.modules.mzXML_importer.mzXMLimporter method) grab_im_data() (unidec.modules.mzMLimporter.mzMLimporter method) GraphPlot() (unidec.modules.UniFit.KDmodel method) grid_unidec() (in module unidec.modules.GridDecon) (in module unidec.modules.GridDecon2) GridDeconWindow (class in unidec.modules.GridDecon) (class in unidec.modules.GridDecon2) gsmooth() (in module unidec.tools) gzip_files() (in module unidec.modules.mzMLimporter)

H

harray_process() (unidec.modules.CDEng.UniDecCD method) hdf5_to_imzml() (in module unidec.metaunidec.imzml_reader) header_desc() (in module unidec.modules.tims_import_wizard.data_importer) header_test() (in module unidec.tools) help_frame() (unidec.UPP.HelpDlg method) HelpDlg (class in unidec.metaunidec.mudhelp) (class in unidec.UPP) hide_columns() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) hide_columns_by_keyword() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) hide_empty_columns() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) hist2d() (unidec.modules.plot2d.Plot2dBase method) hist_data_prep() (unidec.modules.CDEng.UniDecCD method) hist_datareduction() (unidec.modules.CDEng.UniDecCD method) hist_filter_smash() (unidec.modules.CDEng.UniDecCD method)

hist_int_threshold() (unidec.modules.CDEng.UniDecCD method) hist_mass_filter() (unidec.modules.CDEng.UniDecCD method) hist_nativeZ_filter() (unidec.modules.CDEng.UniDecCD method) histogram() (unidec.modules.CDEng.UniDecCD method) (unidec.modules.plot1d.Plot1dBase method) histogramLC() (unidec.modules.HTEng.UniDecCDHT method) HRAMResult (class in unidec.modules.hramtools) HRAMSearchSpace (class in unidec.modules.hramtools) htdecon() (unidec.modules.HTEng.HTEng method) HTEng (class in unidec.modules.HTEng) html_cleaner() (in module unidec.modules.html_writer) html_close() (in module unidec.modules.html_writer) html_open() (in module unidec.modules.html_writer) html_pagebreak() (in module unidec.modules.html_writer) html_title() (in module unidec.modules.html_writer)

I

I2MSImporter (class in unidec.modules.i2ms_importer) iFAMS_Window (class in unidec.iFAMS.wxiFAMS) ifft_fun() (in module unidec.modules.CDEng) ignore() (unidec.modules.isolated_packages.NoZoomSpan.NoZoomSpan method) (unidec.modules.isolated_packages.ZoomBox.ZoomBox method) (unidec.modules.isolated_packages.ZoomSpan.ZoomSpan method) image_plot() (unidec.metaunidec.image_plotter.ImagingWindow method) ImagingWindow (class in unidec.metaunidec.image_plotter) IMListCtrl (class in unidec.modules.IM_windows) IMListCtrlPanel (class in unidec.modules.IM_windows) import_config() (unidec.modules.unidec_presbase.UniDecPres method) import_config_to_gui() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.gui_elements.ud_controls.main_controls method) import_file() (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) import_grids() (unidec.metaunidec.mudstruct.MetaDataSet method) import_grids_and_peaks() (unidec.metaunidec.mudstruct.MetaDataSet method) import_hdf5() (unidec.metaunidec.mudstruct.MetaDataSet method) import_kernel_and_run() (in module unidec.modules.DoubleDec) import_mzml() (unidec.metaunidec.mudeng.MetaUniDec method) import_peaks() (unidec.metaunidec.mudstruct.MetaDataSet method) import_sites() (unidec.modules.masstools.MassSelection method) import_smashfile() (unidec.modules.unidecstructure.UniDecConfig method) import_vars() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.metaunidec.mudstruct.MetaDataSet method) import_window() (unidec.metaunidec.mudhelp.HelpDlg method) ImportWizard (class in unidec.ImportWizard) (class in unidec.metaunidec.meta_import_wizard.meta_import_wizard) IMToolExtract (class in unidec.modules.IM_windows) IMTools (class in unidec.modules.IM_windows) Imzml_Reader (class in unidec.metaunidec.imzml_reader) imzml_to_hdf5() (in module unidec.metaunidec.imzml_reader) (unidec.metaunidec.mudeng.MetaUniDec method) index_to_oname() (in module unidec.tools) index_to_sname() (in module unidec.modules.matchtools) init() (unidec.GUniDec.UniDecApp method) (unidec.Launcher.UniDecLauncher method) (unidec.metaunidec.image_plotter.ImagingWindow method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.PlotAnimations.AnimationWindow method) (unidec.modules.UniList.UniListApp method) (unidec.UniChrom.ChromApp method) (unidec.UniChromCD.UniChromCDApp method) (unidec.UniDecCD.UniDecCDApp method) init_data() (unidec.metaunidec.image_plotter.ImagingWindow method)

init_dialog() (unidec.modules.masstools.MassSelection method) initalize_dialog() (unidec.modules.AutocorrWindow.AutocorrWindow method) initialize() (unidec.modules.isolated_packages.ZoomBox.ZoomBox method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidecstructure.UniDecConfig method) initialize_interface() (unidec.metaunidec.gui_elements.um_list_ctrl.SelectMarker method) (unidec.modules.CDCal.CDCalDialog method) (unidec.modules.gui_elements.peaklistsort.SelectMarker method) (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.modules.miscwindows.AdditionalParameters method) (unidec.modules.miscwindows.DoubleInputDialog method) (unidec.modules.miscwindows.FileNameDialog method) (unidec.modules.miscwindows.MultiInputDialog method) (unidec.modules.miscwindows.SaveFigureDialog method) (unidec.modules.miscwindows.SingleInputDialog method) (unidec.modules.nativez.NativeZ method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) initialize_system_paths() (unidec.modules.unidecstructure.UniDecConfig method) initiate_dialog() (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) inputmax() (in module unidec.iFAMS.iFAMSfun) insetplot() (unidec.modules.plot1d.Plot1dBase method) (unidec.modules.UniList.UniListApp method) int_filter() (in module unidec.LipiDec.SkyQuant) integrate() (in module unidec.tools) (unidec.modules.peakstructure.Peaks method) (unidec.modules.unidec_enginebase.UniDecEngine method) intensitythresh() (in module unidec.modules.IM_functions) (in module unidec.tools) intensitythresh_del() (in module unidec.tools) intensitythresh_sub() (in module unidec.tools) interp_pos() (in module unidec.tools) interp_val() (in module unidec.tools) invinjtime (unidec.modules.i2ms_importer.I2MSImporter attribute) is_empty_column() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) isempty() (in module unidec.tools) isogrids() (unidec.modules.plot3d.CubePlot method) isojim() (in module unidec.modules.isotopetools) isolabels() (unidec.modules.plot3d.CubePlot method) isolated_peak_fit() (in module unidec.modules.fitting) isolines() (unidec.modules.plot3d.CubePlot method) isometric_projection() (unidec.modules.plot3d.CubePlot method) isoticks() (unidec.modules.plot3d.CubePlot method) isotope_ratios() (in module unidec.LipiDec.AddFeaturestoDF) isotopic_spectrum() (in module unidec.modules.MassSpecBuilder)

K

kda_test() (unidec.modules.PlotBase.PlotBase method) KDmodel (class in unidec.modules.UniFit) kdstruct (class in unidec.modules.UniFit) kendrick_analysis() (in module unidec.LipiDec.AddFeaturestoDF) (in module unidec.tools)

kendrick_continuous() (unidec.engine.UniDec method) kendrick_peaks() (unidec.engine.UniDec method) kill_labels() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) kimport() (unidec.modules.DoubleDec.DoubleDec method)

L

label() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) label_plot_correct() (unidec.engine.UniDec method) launch() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) ldis() (in module unidec.modules.fitting) ldis_fit() (in module unidec.modules.fitting) least_squares_minimize() (in module unidec.modules.isolated_packages.MD_Fitter) (in module unidec.modules.MassFitter) left_click() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) lengths() (in module unidec.tools) limit_data() (in module unidec.tools) limit_search_space() (unidec.modules.hramtools.HRAMSearchSpace method) lin_fit() (in module unidec.modules.fitting) line_out() (unidec.modules.peakstructure.Peak method) linear_axis() (in module unidec.tools) linear_interpolation() (in module unidec.tools) linear_regression_peaks() (unidec.modules.unidec_enginebase.UniDecEngine method) linearize() (in module unidec.tools) linearize_2d() (in module unidec.modules.IM_functions) linearmodel() (in module unidec.modules.CDEng) lintegrate() (in module unidec.tools) linterpolate() (in module unidec.tools) LipDropTarget (class in unidec.LipiDec.LipyDec) LipiDec (class in unidec.LipiDec.Infusion.LipiDecEng) LipiDecRunner (class in unidec.LipiDec.Infusion.LipiDecEng) LipyDecWindow (class in unidec.LipiDec.LipyDec) ListCtrlPanel (class in unidec.DataCollector) (class in unidec.metaunidec.gui_elements.list_ctrls) (class in unidec.metaunidec.gui_elements.um_list_ctrl) (class in unidec.modules.gui_elements.HTCD_ListCtrls) load() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.image_plotter.ImagingWindow method) (unidec.metaunidec.ultrameta.DataCollector method)

load_check2() (unidec.LipiDec.LipyDec.LipyDecWindow method) load_check3() (unidec.LipiDec.LipyDec.LipyDecWindow method) load_checkboxes() (unidec.LipiDec.LipyDec.LipyDecWindow method) load_chroms() (unidec.UniChromCD.UniChromCDApp method) load_common_masses() (unidec.modules.masstools.MassSelection method) load_config() (unidec.modules.unidec_enginebase.UniDecEngine method) load_csv() (unidec.modules.CDCal.CDCalDialog method) load_data() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) load_default() (unidec.modules.unidec_enginebase.UniDecEngine method) load_eng() (unidec.modules.plateplot.PlateFrame method) load_example_data() (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) load_file() (unidec.UPP.UPPApp method) load_mz_file() (in module unidec.tools) load_mzml() (unidec.modules.ChromEng.ChromEngine method) load_ofile() (unidec.modules.unidec_enginebase.UniDecEngine method) load_params_from_hdf5() (unidec.metaunidec.ultrameta.DataCollector method) load_peaks() (unidec.modules.unidec_enginebase.UniDecEngine method) load_plot1() (unidec.metaunidec.image_plotter.ImagingWindow method) load_plot4() (unidec.metaunidec.image_plotter.ImagingWindow method) load_state() (unidec.engine.UniDec method) load_to_gui() (unidec.modules.IM_windows.IMTools method) (unidec.UniChrom.ChromApp method) (unidec.UPP.UPPApp method) load_x_from_peaks() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) loadpeaks() (unidec.modules.IM_windows.IMToolExtract method) localmax() (in module unidec.tools) localmax2() (in module unidec.tools) localmaxpos() (in module unidec.tools) logistic() (in module unidec.modules.fitting) Lview (class in unidec.Launcher)

M

main_controls (class in unidec.metaunidec.gui_elements.ud_cont_meta) (class in unidec.modules.gui_elements.CD_controls) (class in unidec.modules.gui_elements.ud_controls) main_menu (class in unidec.modules.gui_elements.ud_menu) Mainwindow (class in unidec.metaunidec.mudview) (class in unidec.modules.mainwindow) MainwindowBase (class in unidec.modules.gui_elements.mainwindow_base) make() (unidec.modules.nativez.Zoffset method) make2dplots() (unidec.MetaUniDec.MetaUniDecBase method) make_2d_plot() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.UniChromCD.UniChromCDApp method) make_adduct_db() (in module unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator) make_all_matches() (in module unidec.tools) make_alpha_cmap() (in module unidec.tools) make_charge_time_2dplot() (unidec.UniChromCD.UniChromCDApp method) make_color_plot() (unidec.modules.ColorPlot.ColorPlot2D method) make_compare_color_plot() (unidec.modules.ColorPlot.ColorPlot2D method) make_cube_plot() (unidec.GUniDec.UniDecApp method) (unidec.UniChromCD.UniChromCDApp method) make_ext_plots() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) make_f_array() (unidec.modules.nativez.NativeZ method) make_graph_agg() (in module unidec.modules.UniFit) make_grid_plots() (unidec.DataCollector.DataCollector method) make_grids() (unidec.metaunidec.mudeng.MetaUniDec method) make_im_plots() (unidec.GUniDec.UniDecApp method) make_image_plot() (unidec.MetaUniDec.UniDecApp method) make_isolated_match() (in module unidec.tools) make_isomatrices() (unidec.modules.plot3d.CubePlot method) make_kernel() (in module unidec.modules.DoubleDec) (unidec.modules.CDEng.UniDecCD method) make_list_plots() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) make_mass_cube_plot() (unidec.UniChromCD.UniChromCDApp method) make_mass_list() (in module unidec.modules.isolated_packages.MD_Fitter) (in module unidec.modules.MassFitter) make_mass_spectrum() (in module unidec.modules.MassSpecBuilder) make_mass_time_2dplot() (unidec.UniChromCD.UniChromCDApp method) make_mixed_nanodiscs() (in module unidec.modules.NanodiscBuilder) make_mz_time_2dplot() (unidec.UniChromCD.UniChromCDApp method) make_mzmass_plot() (unidec.UniDecCD.UniDecCDApp method) make_mzmass_plot_continuous() (unidec.UniDecCD.UniDecCDApp method) make_nanodiscs() (in module unidec.modules.NanodiscBuilder) make_oligomers() (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidecstructure.OligomerContainer method) make_peak_shape() (in module unidec.tools) make_peaks_mztab() (in module unidec.tools) make_peaks_mztab_spectrum() (in module unidec.tools) make_plate() (unidec.modules.plateplot.PlatePlot method) make_plot() (unidec.engine.UniDec method) (unidec.LipiDec.Infusion.LipiDecEng.LipiDecRunner method) (unidec.modules.plateplot.PlateFrame method) (unidec.modules.plot_waterfall.WaterfallFrame method) (unidec.modules.SubDiv.SubDivFrame method) make_plot_4() (unidec.LipiDec.LipyDec.LipyDecWindow method) make_plot_5() (unidec.LipiDec.LipyDec.LipyDecWindow method) make_plot_7() (unidec.modules.nativez.NativeZ method) make_plots() (unidec.LipiDec.LipyDec.LipyDecWindow method) make_pmat() (in module unidec.modules.GridDecon) (in module unidec.modules.GridDecon2) make_preset_menu() (in module unidec.modules.isolated_packages.preset_manager) make_selection() (unidec.UniChrom.ChromApp method) make_shade_plot() (unidec.DataCollector.DataCollector method) make_spectrum() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) make_subs_list() (in module unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator) make_tic_plot() (unidec.UniChromCD.UniChromCDApp method) make_top() (unidec.MetaUniDec.MetaUniDecBase method) make_waterfall_plots() (unidec.MetaUniDec.MetaUniDecBase method) makebarchart() (unidec.modules.Extract2D.Extract2DPlot method) makeconvspecies() (in module unidec.tools) makedataplot() (unidec.modules.Extract2D.Extract2DPlot method) MakeFitGrid() (unidec.modules.UniFit.KDmodel method) MakeGrid() (in module unidec.modules.UniFit) makegrid() (unidec.modules.Extract2D.Extract2DPlot method) makegrids() (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) makemass() (in module unidec.modules.isotopetools) makeplot() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) (unidec.metaunidec.metafft.FFTWindow method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) (unidec.modules.MassDefects.MassDefectWindow method) makeplot1() (unidec.engine.UniDec method) (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.UniDecCD.UniDecCDApp method) makeplot1im() (unidec.engine.UniDec method) makeplot2() (unidec.DataCollector.DataCollector method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) makeplot2_mud() (unidec.MetaUniDec.MetaUniDecBase method) makeplot3() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniDecCD.UniDecCDApp method) makeplot4() (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) makeplot5() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidec_presbase.UniDecPres method) makeplot6() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.unidec_enginebase.UniDecEngine method) makeplot7() (unidec.MetaUniDec.MetaUniDecBase method) makeplot8() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.MetaUniDec.UniDecApp method) makeplot9() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.MetaUniDec.UniDecApp method) makeplotc() (unidec.UniChrom.ChromApp method) makeplottotal() (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.MassDefects.MassDefectWindow method) makeplotwap() (unidec.modules.Extract2D.Extract2DPlot method) makespecfun() (in module unidec.tools) MakeTexReport() (in module unidec.modules.isolated_packages.texmaker) (in module unidec.modules.isolated_packages.texmaker_nmsgsb) MakeUniDecConfig() (in module unidec.modules.tims_import_wizard.data_importer) ManualListCrtl (class in unidec.modules.ManualSelectionWindow) ManualListCtrlPanel (class in unidec.modules.ManualSelectionWindow) ManualSelection (class in unidec.modules.ManualSelectionWindow) masked_demultiplex_ht() (unidec.modules.HTEng.HTEng method) mass_defect_df() (in module unidec.LipiDec.AddFeaturestoDF) mass_grid_to_f_grid() (unidec.engine.UniDec method) mass_weighted_average() (in module unidec.tools) MassDefectCompareWindow (class in unidec.modules.isolated_packages.MD_compare) MassDefectExtractorWindow (class in unidec.modules.MassDefectExtractor) MassDefectWindow (class in unidec.modules.MassDefects) MassFitter (class in unidec.modules.MassFitter) massfromsmiles() (in module unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator) massfromstruct() (in module unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator) MassListCtrl (class in unidec.modules.masstools) MassSelection (class in unidec.modules.masstools) match() (in module unidec.tools) (unidec.modules.unidec_enginebase.UniDecEngine method) match_dirs_recursive() (in module unidec.tools) match_files() (in module unidec.tools) match_files_recursive() (in module unidec.tools) match_to_target() (unidec.modules.hramtools.HRAMSearchSpace method) matcher() (in module unidec.LipiDec.Infusion.LipiDecEng) MatchListCtrl (class in unidec.modules.masstools) maxfreq() (in module unidec.iFAMS.iFAMSfun) MD_Fitter() (in module unidec.modules.isolated_packages.MD_Fitter) md_plot() (unidec.LipiDec.LipyDec.LipyDecWindow method) menu_4001() (unidec.modules.gui_elements.ud_menu.main_menu method) menu_401_403() (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.ud_menu.main_menu method) menu_501_503() (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) menu_601_602() (unidec.modules.gui_elements.CDMenu.CDMenu method) menu_fcmaps() (unidec.DataCollector.DataCollector method) menu_xcmaps() (unidec.DataCollector.DataCollector method) merge_im_spectra() (in module unidec.modules.mzMLimporter) merge_in_peaks() (unidec.modules.peakstructure.Peaks method) merge_spectra() (in module unidec.modules.mzMLimporter) mergedata() (in module unidec.tools) mergedata2d() (in module unidec.tools) mergedata2dexact() (in module unidec.tools) mergepeaks() (in module unidec.tools) meta_menu (class in unidec.metaunidec.gui_elements.ud_menu_meta)

MetaDataSet (class in unidec.metaunidec.mudstruct) MetaUniDec (class in unidec.metaunidec.mudeng) metaunidec_call() (in module unidec.metaunidec.mudeng) MetaUniDecBase (class in unidec.MetaUniDec) min_array() (in module unidec.modules.IM_functions) MinFree() (in module unidec.modules.UniFit) MinFreeError() (in module unidec.modules.UniFit) Minimize() (in module unidec.modules.UniFit) ModPaths() (unidec.modules.UniFit.KDmodel method) ModPathsAgg() (unidec.modules.UniFit.KDmodel method) module unidec unidec.batch unidec.DataCollector unidec.engine unidec.GUniDec unidec.iFAMS unidec.iFAMS.iFAMSfun unidec.iFAMS.wxiFAMS unidec.ImportWizard unidec.Launcher unidec.LipiDec unidec.LipiDec.AddFeaturestoDF unidec.LipiDec.Infusion unidec.LipiDec.Infusion.Formulas unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator unidec.LipiDec.Infusion.LipiDecEng unidec.LipiDec.Infusion.ShotgunLipiDec unidec.LipiDec.Infusion.ShotgunLipiDecMTM unidec.LipiDec.LipyDec unidec.LipiDec.SkyQuant unidec.MetaUniDec unidec.metaunidec unidec.metaunidec.gui_elements unidec.metaunidec.gui_elements.list_ctrls unidec.metaunidec.gui_elements.ud_cont_meta unidec.metaunidec.gui_elements.ud_menu_meta unidec.metaunidec.gui_elements.um_list_ctrl unidec.metaunidec.image_plotter unidec.metaunidec.imzml_reader unidec.metaunidec.meta_import_wizard unidec.metaunidec.meta_import_wizard.meta_data_importer unidec.metaunidec.meta_import_wizard.meta_import_wizard unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl unidec.metaunidec.meta_import_wizard.MetaTagTypes unidec.metaunidec.metafft unidec.metaunidec.mudeng unidec.metaunidec.mudhelp unidec.metaunidec.mudstruct unidec.metaunidec.mudview unidec.metaunidec.test_MUD unidec.metaunidec.ultrameta unidec.modules unidec.modules.AutocorrWindow unidec.modules.biopolymertools unidec.modules.CDCal unidec.modules.CDEng unidec.modules.ChromEng unidec.modules.ColorPlot unidec.modules.data_reader unidec.modules.DoubleDec unidec.modules.Extract2D unidec.modules.fft_window unidec.modules.fitting unidec.modules.GridDecon unidec.modules.GridDecon2 unidec.modules.gui_elements unidec.modules.gui_elements.CD_controls unidec.modules.gui_elements.CDMenu unidec.modules.gui_elements.CDWindow unidec.modules.gui_elements.ChromWindow unidec.modules.gui_elements.HTCD_ListCtrls unidec.modules.gui_elements.mainwindow_base unidec.modules.gui_elements.peaklistsort unidec.modules.gui_elements.ud_controls unidec.modules.gui_elements.ud_menu unidec.modules.hdf5_tools unidec.modules.hramtools unidec.modules.HTEng unidec.modules.html_writer unidec.modules.i2ms_importer unidec.modules.IM_functions unidec.modules.IM_windows unidec.modules.isolated_packages unidec.modules.isolated_packages.biopolymer_calculator unidec.modules.isolated_packages.FileDialogs unidec.modules.isolated_packages.MD_compare unidec.modules.isolated_packages.MD_Fitter unidec.modules.isolated_packages.mql_tool unidec.modules.isolated_packages.navia_importer unidec.modules.isolated_packages.NoZoomSpan unidec.modules.isolated_packages.preset_manager unidec.modules.isolated_packages.score_window unidec.modules.isolated_packages.spreadsheet unidec.modules.isolated_packages.texmaker unidec.modules.isolated_packages.texmaker_nmsgsb unidec.modules.isolated_packages.ZoomBox unidec.modules.isolated_packages.ZoomCommon unidec.modules.isolated_packages.ZoomSpan unidec.modules.isotopetools unidec.modules.mainwindow unidec.modules.ManualSelectionWindow unidec.modules.MassDefectExtractor unidec.modules.MassDefects unidec.modules.MassFitter unidec.modules.MassSpecBuilder unidec.modules.masstools unidec.modules.matchtools unidec.modules.miscwindows unidec.modules.mzMLimporter unidec.modules.mzmlparse_auto unidec.modules.mzXML_importer unidec.modules.NanodiscBuilder unidec.modules.nativez unidec.modules.peakstructure unidec.modules.peakwidthtools unidec.modules.plateplot unidec.modules.plot1d unidec.modules.plot2d unidec.modules.plot3d unidec.modules.plot_waterfall unidec.modules.PlotAnimations unidec.modules.PlotBase unidec.modules.PlottingWindow unidec.modules.SubDiv unidec.modules.tims_import_wizard unidec.modules.tims_import_wizard.data_importer unidec.modules.tims_import_wizard.get_data_wrapper unidec.modules.tims_import_wizard.import_wizard_grid unidec.modules.tims_import_wizard.import_wizard_treectrl unidec.modules.tims_import_wizard.TagTypes unidec.modules.unidec_enginebase unidec.modules.unidec_presbase unidec.modules.unidecstructure unidec.modules.UniFit unidec.modules.UniList unidec.tools unidec.UniChrom unidec.UniChromCD unidec.UniDecCD unidec.UPP mouse_activate() (unidec.modules.PlottingWindow.PlottingWindowBase method) mouse_inactivate() (unidec.modules.PlottingWindow.PlottingWindowBase method) mp_process_from_wizard() (in module unidec.modules.tims_import_wizard.data_importer) mperror() (in module unidec.modules.fitting) mpinit() (in module unidec.modules.fitting) MQL_TOOL (class in unidec.modules.isolated_packages.mql_tool) MultiInputDialog (class in unidec.modules.miscwindows) multiplot() (unidec.modules.plot1d.Plot1dBase method) (unidec.modules.UniList.UniListApp method) multipoisson() (in module unidec.modules.fitting) MyApp (class in unidec.modules.isolated_packages.spreadsheet) MyFileDropTarget (class in unidec.metaunidec.mudview) (class in unidec.modules.gui_elements.CDWindow) (class in unidec.modules.mainwindow) (class in unidec.UPP) MyGrid (class in unidec.modules.isolated_packages.spreadsheet) MZLimitsEvent (class in unidec.modules.PlottingWindow) mzMLimporter (class in unidec.modules.mzMLimporter) mzXMLimporter (class in unidec.modules.mzXML_importer)

N

NativeZ (class in unidec.modules.nativez) navia2config() (in module unidec.modules.isolated_packages.navia_importer) navia2manualfile() (in module unidec.modules.isolated_packages.navia_importer) navia2ofile() (in module unidec.modules.isolated_packages.navia_importer) navia_import() (in module unidec.modules.isolated_packages.navia_importer) ndis() (in module unidec.modules.CDEng) (in module unidec.modules.fitting) ndis_fit() (in module unidec.modules.fitting) ndis_std() (in module unidec.modules.fitting) nearest() (in module unidec.tools) nearestunsorted() (in module unidec.tools) NetworkFrame (class in unidec.modules.PlottingWindow) new_axes() (unidec.modules.isolated_packages.NoZoomSpan.NoZoomSpan method) (unidec.modules.isolated_packages.ZoomBox.ZoomBox method) (unidec.modules.isolated_packages.ZoomSpan.ZoomSpan method) new_file() (unidec.metaunidec.mudstruct.MetaDataSet method) (unidec.MetaUniDec.UniDecApp method)

new_get_data() (in module unidec.modules.tims_import_wizard.get_data_wrapper) new_get_data_MS() (in module unidec.modules.tims_import_wizard.get_data_wrapper) next_free_row() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.tims_import_wizard.import_wizard_grid.WizardGrid method) noise_level2() (in module unidec.tools) nonlinear_axis() (in module unidec.modules.mzMLimporter) (in module unidec.tools) nonlinearize() (in module unidec.tools) nonlinstickconv() (in module unidec.tools) norm_to_std() (in module unidec.LipiDec.SkyQuant) normalize() (in module unidec.tools) normalize_exgrid() (unidec.metaunidec.mudeng.MetaUniDec method) normalize_extracts() (in module unidec.tools) normalize_peaks() (unidec.engine.UniDec method) notchanged (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow attribute) NoZoomSpan (class in unidec.modules.isolated_packages.NoZoomSpan)

O

ofile_reader() (in module unidec.modules.unidecstructure) oligomer_help() (unidec.metaunidec.mudhelp.HelpDlg method) OligomerContainer (class in unidec.modules.unidecstructure) OligomerListCtrl (class in unidec.modules.masstools) omega() (in module unidec.iFAMS.iFAMSfun) on_2d_grid() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_2dgrid() (unidec.DataCollector.DataCollector method) on_about() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_absolute_path() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_activate() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.tims_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) on_add() (unidec.modules.CDCal.CDCalDialog method) (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) (unidec.modules.nativez.NativeZ method) (unidec.modules.UniList.UniListApp method) on_add_col() (unidec.modules.masstools.MassSelection method) on_add_file() (unidec.MetaUniDec.UniDecApp method) on_add_files() (unidec.UPP.UPPApp method) on_add_from_plot() (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) on_add_line() (unidec.metaunidec.metafft.FFTWindow method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) on_add_mass() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.masstools.MassSelection method) on_add_multilines() (unidec.modules.MassDefects.MassDefectWindow method) on_add_new_common_mass() (unidec.modules.masstools.MassSelection method) on_add_oligomer() (unidec.modules.masstools.MassSelection method) on_add_site() (unidec.modules.masstools.MassSelection method) on_add_to_common() (unidec.modules.masstools.OligomerListCtrl method) on_add_to_ss() (unidec.modules.masstools.MassSelection method) on_add_x() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_add_y() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_additional_filters() (unidec.MetaUniDec.UniDecApp method) on_additional_parameters() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) on_additional_plotting() (unidec.MetaUniDec.UniDecApp method) on_all_next() (unidec.modules.Extract2D.Extract2DPlot method) on_animate() (unidec.DataCollector.DataCollector method) on_animate2() (unidec.DataCollector.DataCollector method) on_animate_2d() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_2d_mass() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_2d_mz() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_annotated_mass() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_annotated_mz() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_help() (unidec.MetaUniDec.UniDecApp method) on_animate_mass() (unidec.MetaUniDec.MetaUniDecBase method) on_animate_mz() (unidec.MetaUniDec.MetaUniDecBase method) on_auto() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_auto_import_help() (unidec.MetaUniDec.UniDecApp method) on_auto_match_help() (unidec.MetaUniDec.UniDecApp method) on_auto_peak_width() (unidec.modules.unidec_presbase.UniDecPres method) on_auto_set_ct() (unidec.UniChromCD.UniChromCDApp method) on_autocorr() (unidec.DataCollector.DataCollector method) on_autocorr2() (unidec.MetaUniDec.MetaUniDecBase method) (unidec.UniChromCD.UniChromCDApp method) on_autocorr_help() (unidec.MetaUniDec.UniDecApp method) on_autocorr_window() (unidec.modules.masstools.MassSelection method) (unidec.modules.unidec_presbase.UniDecPres method) on_autocorr_window_mud() (unidec.MetaUniDec.MetaUniDecBase method) on_autoformat() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) on_b_select() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_back() (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.MassDefects.MassDefectWindow method) (unidec.modules.PlotAnimations.AnimationWindow method) on_backcheck() (unidec.modules.gui_elements.ud_controls.main_controls method) on_bar_graphs() (unidec.metaunidec.ultrameta.DataCollector method) on_baseline_help() (unidec.MetaUniDec.UniDecApp method) on_batch() (unidec.GUniDec.UniDecApp method) (unidec.UniDecCD.UniDecCDApp method) on_batch2() (unidec.GUniDec.UniDecApp method) on_batch_chrom1() (unidec.UniChrom.ChromApp method) on_batch_chrom_dirs() (unidec.UniChrom.ChromApp method) on_batch_config() (unidec.MetaUniDec.UniDecApp method) on_batch_cre() (unidec.MetaUniDec.UniDecApp method) on_batch_extract() (unidec.MetaUniDec.UniDecApp method) on_batch_help() (unidec.MetaUniDec.UniDecApp method) on_batch_raw() (unidec.GUniDec.UniDecApp method) on_batch_run() (unidec.MetaUniDec.UniDecApp method) on_biopolymer() (unidec.modules.masstools.MassListCtrl method) (unidec.modules.masstools.OligomerListCtrl method) (unidec.modules.unidec_presbase.UniDecPres method) on_calc() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) on_calibrate() (unidec.GUniDec.UniDecApp method) (unidec.UniDecCD.UniDecCDApp method) on_cell_right_click() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) on_center() (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) on_center_of_mass() (unidec.GUniDec.UniDecApp method) on_change() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) on_charge_plot() (unidec.GUniDec.UniDecApp method) on_charge_states() (unidec.modules.unidec_presbase.UniDecPres method) on_charge_states_mud() (unidec.MetaUniDec.MetaUniDecBase method) on_check_for_alt_match() (unidec.modules.masstools.MassSelection method) on_check_manual() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_check_smash() (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_choose_dir() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) (unidec.modules.miscwindows.SaveFigureDialog method) on_chrom_peaks() (unidec.UniChrom.ChromApp method) on_clear() (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) on_clear_masslist() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.masstools.MassSelection method) on_clear_oligolist() (unidec.modules.masstools.MassSelection method) on_clear_sites() (unidec.modules.masstools.MassSelection method) on_clear_spectra() (unidec.UniChrom.ChromApp method) on_click() (unidec.modules.UniList.UniListWindow method) on_close() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) (unidec.Launcher.UniDecLauncher method) (unidec.LipiDec.LipyDec.LipyDecWindow method) (unidec.metaunidec.gui_elements.um_list_ctrl.SelectMarker method) (unidec.metaunidec.metafft.FFTWindow method) (unidec.modules.AutocorrWindow.AutocorrWindow method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) (unidec.modules.gui_elements.peaklistsort.SelectMarker method) (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) (unidec.modules.masstools.MassSelection method) (unidec.modules.miscwindows.AdditionalParameters method) (unidec.modules.miscwindows.DoubleInputDialog method) (unidec.modules.miscwindows.FileNameDialog method) (unidec.modules.miscwindows.MultiInputDialog method) (unidec.modules.miscwindows.SaveFigureDialog method) (unidec.modules.miscwindows.SingleInputDialog method) (unidec.modules.nativez.NativeZ method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) (unidec.modules.PlotAnimations.AnimationWindow method) on_close_cancel() (unidec.modules.AutocorrWindow.AutocorrWindow method) (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.modules.isolated_packages.biopolymer_calculator.BiopolymerFrame method) (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) (unidec.modules.masstools.MassSelection method) (unidec.modules.miscwindows.AdditionalParameters method) (unidec.modules.miscwindows.FileNameDialog method) (unidec.modules.miscwindows.SaveFigureDialog method) (unidec.modules.nativez.NativeZ method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) on_collapse_all() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_color_change() (unidec.MetaUniDec.MetaUniDecBase method) on_color_peaks() (unidec.modules.unidec_presbase.UniDecPres method) on_color_plot1d() (unidec.GUniDec.UniDecApp method) on_column_click() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_com() (unidec.modules.MassDefects.MassDefectWindow method) on_common_to_oligo() (unidec.modules.masstools.MassSelection method) on_compare() (unidec.UniDecCD.UniDecCDApp method) on_compare2() (unidec.UniDecCD.UniDecCDApp method) on_compare_proc() (unidec.UniDecCD.UniDecCDApp method) on_compare_regions() (unidec.modules.fft_window.FFTWindow method) on_compare_window() (unidec.modules.MassDefects.MassDefectWindow method) on_conversion_wizard() (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) on_cosine() (unidec.metaunidec.image_plotter.ImagingWindow method) on_custom_defaults() (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) on_data_collector() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) on_data_processing() (unidec.MetaUniDec.UniDecApp method) on_dataprep_button() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChromCD.UniChromCDApp method) (unidec.UniDecCD.UniDecCDApp method) on_defaults() (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.gui_elements.ud_menu.main_menu method) (unidec.modules.isolated_packages.preset_manager.TestWindow method) on_defect() (unidec.DataCollector.DataCollector method) on_delete() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.nativez.NativeZ method) (unidec.modules.UniList.UDListCtrl method) (unidec.UniChrom.ChromApp method) on_delete_spectrum() (unidec.MetaUniDec.MetaUniDecBase method) on_differences() (unidec.modules.unidec_presbase.UniDecPres method) on_double_dec() (unidec.modules.gui_elements.ud_controls.main_controls method) on_doubledec() (unidec.DataCollector.DataCollector method) on_draw() (unidec.modules.PlottingWindow.PlottingWindowBase method) on_envelope_fun() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) on_ex() (unidec.GUniDec.UniDecApp method) on_example_data() (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) on_exe_mode() (unidec.UniDecCD.UniDecCDApp method) on_exit() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.UPP.UPPApp method) on_exp_fit() (unidec.metaunidec.ultrameta.DataCollector method) (unidec.MetaUniDec.UniDecApp method) on_exp_plot() (unidec.metaunidec.ultrameta.BarGraphWindow method) on_expand_all() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_expand_blue() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_expand_main() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_expand_red() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_expand_yellow() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_export() (unidec.DataCollector.DataCollector method) on_export_arrays() (unidec.UniChromCD.UniChromCDApp method) on_export_params() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_extract() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) on_extract_window() (unidec.modules.MassDefects.MassDefectWindow method) on_f1button() (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) on_f2button() (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) on_fft() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) on_fft_help() (unidec.MetaUniDec.UniDecApp method) on_fft_window() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_fft_window2() (unidec.MetaUniDec.MetaUniDecBase method) on_file_name() (unidec.GUniDec.UniDecApp method) on_filter_peaks() (unidec.modules.unidec_presbase.UniDecPres method) on_filter_peaks_MUD() (unidec.MetaUniDec.MetaUniDecBase method) on_fit() (unidec.MetaUniDec.UniDecApp method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) on_fit2() (unidec.modules.Extract2D.Extract2DPlot method) on_fit3() (unidec.modules.Extract2D.Extract2DPlot method) on_fit4() (unidec.modules.Extract2D.Extract2DPlot method) on_fit_masses() (unidec.GUniDec.UniDecApp method) on_fitting() (unidec.DataCollector.DataCollector method) on_flip() (unidec.modules.peakwidthtools.PeakTools2d method) on_flip_mode() (unidec.GUniDec.UniDecApp method) on_flip_tabbed() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) on_flip_twave() (unidec.GUniDec.UniDecApp method) (unidec.modules.IM_windows.IMTools method) on_folder_path_change() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) on_fourier_fil() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) on_full() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_gen_html_report() (unidec.GUniDec.UniDecApp method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniDecCD.UniDecCDApp method) on_get_mzlimits() (unidec.modules.unidec_presbase.UniDecPres method) on_get_peaks() (unidec.modules.fft_window.FFTWindow method) on_getting_started() (unidec.MetaUniDec.UniDecApp method) on_grid_decon() (unidec.GUniDec.UniDecApp method) on_harm_average() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) on_hdf5_open() (unidec.DataCollector.DataCollector method) on_hdf5_to_imzml() (unidec.MetaUniDec.UniDecApp method) on_help_page() (unidec.UPP.UPPApp method) on_hide_columns() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.UPP.UPPApp method) on_hide_empty_columns() (unidec.UPP.UPPApp method) on_hide_height_columns() (unidec.UPP.UPPApp method) on_hide_percent_columns() (unidec.UPP.UPPApp method) on_idle() (unidec.modules.PlottingWindow.PlottingWindowBase method) on_iFAMS() (unidec.GUniDec.UniDecApp method) on_ignore() (unidec.MetaUniDec.MetaUniDecBase method) on_ignore_repopulate() (unidec.UniChromCD.UniChromCDApp method) on_im_extract() (unidec.GUniDec.UniDecApp method) on_im_tools() (unidec.GUniDec.UniDecApp method) on_imaging_viewer() (unidec.MetaUniDec.UniDecApp method) on_import() (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) on_import_masses() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.masstools.MassSelection method) on_import_multiple_scans() (unidec.MetaUniDec.UniDecApp method) on_import_multiple_times() (unidec.MetaUniDec.UniDecApp method) on_import_mzml() (unidec.MetaUniDec.UniDecApp method) on_import_mzml_scans() (unidec.MetaUniDec.UniDecApp method) on_import_oligos() (unidec.modules.masstools.MassSelection method) on_import_sites() (unidec.modules.masstools.MassSelection method) on_import_window() (unidec.MetaUniDec.UniDecApp method) on_import_wizard() (unidec.GUniDec.UniDecApp method) on_imzml_to_hdf5() (unidec.MetaUniDec.UniDecApp method) on_integrate() (unidec.GUniDec.UniDecApp method) (unidec.modules.unidec_presbase.UniDecPres method) on_isolate() (unidec.MetaUniDec.MetaUniDecBase method) on_item_expanded() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.tims_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) on_kd_fit() (unidec.DataCollector.DataCollector method) on_kendrick() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_key() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.PlottingWindow.PlottingWindowBase method) on_lab_frame() (unidec.metaunidec.ultrameta.DataCollector method) on_label_avg_charge_states() (unidec.GUniDec.UniDecApp method) on_label_integral() (unidec.modules.unidec_presbase.UniDecPres method) on_label_masses() (unidec.modules.unidec_presbase.UniDecPres method) on_label_max_charge_states() (unidec.GUniDec.UniDecApp method) on_label_names() (unidec.modules.unidec_presbase.UniDecPres method) on_label_peaks() (unidec.modules.MassDefects.MassDefectWindow method) on_label_right_click() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) on_left_click() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.PlottingWindow.PlottingWindowBase method) on_lin_fit() (unidec.metaunidec.ultrameta.DataCollector method) (unidec.MetaUniDec.UniDecApp method) on_lin_plot() (unidec.metaunidec.ultrameta.BarGraphWindow method) on_linear_regression() (unidec.modules.MassDefects.MassDefectWindow method) on_linreg() (unidec.modules.unidec_presbase.UniDecPres method) on_list_add() (unidec.UniChrom.ChromApp method) on_load() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_load_chroms() (unidec.UniChromCD.UniChromCDApp method) on_load_common_masses() (unidec.modules.masstools.MassSelection method) on_load_conf_file() (unidec.modules.unidec_presbase.UniDecPres method) on_load_csv() (unidec.modules.CDCal.CDCalDialog method) on_load_default() (unidec.modules.unidec_presbase.UniDecPres method) on_load_everything() (unidec.GUniDec.UniDecApp method) on_load_file() (unidec.UPP.UPPApp method) on_load_spectrum() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) on_load_state() (unidec.GUniDec.UniDecApp method) on_local_path() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_m_smooth() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method)

on_man_calc() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) on_manual() (unidec.modules.unidec_presbase.UniDecPres method) on_manual_add() (unidec.UniChrom.ChromApp method) on_mass_list() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_mass_process() (unidec.GUniDec.UniDecApp method) on_mass_tools() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_presbase.UniDecPres method) on_masslist_delete() (unidec.modules.masstools.MassListCtrl method) on_match() (unidec.modules.masstools.MassSelection method) (unidec.modules.unidec_presbase.UniDecPres method) on_match_all() (unidec.modules.masstools.MassSelection method) on_match_isolated() (unidec.modules.masstools.MassSelection method) on_match_sites() (unidec.modules.masstools.MassSelection method) on_motion() (unidec.DataCollector.DataCollector method) (unidec.LipiDec.LipyDec.LipyDecWindow method) (unidec.modules.gui_elements.ChromWindow.ChromWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.UniList.UniListWindow method) on_motion2() (unidec.metaunidec.ultrameta.DataCollector method) on_mousewheel() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_mql() (unidec.GUniDec.UniDecApp method) on_msms_norm() (unidec.DataCollector.DataCollector method) on_nativez_tools() (unidec.GUniDec.UniDecApp method) on_navia() (unidec.GUniDec.UniDecApp method) on_new_file() (unidec.MetaUniDec.UniDecApp method) on_newxy() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) (unidec.modules.PlottingWindow.PlottingWindowBase method) on_next() (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.MassDefects.MassDefectWindow method) (unidec.modules.PlotAnimations.AnimationWindow method) on_oligo_delete() (unidec.modules.masstools.OligomerListCtrl method) on_oligomer_help() (unidec.MetaUniDec.UniDecApp method) on_oligomer_tools() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) on_open() (unidec.GUniDec.UniDecApp method) (unidec.LipiDec.LipyDec.LipyDecWindow method) (unidec.MetaUniDec.UniDecApp method) (unidec.UniChrom.ChromApp method) (unidec.UniDecCD.UniDecCDApp method) on_open_all_html() (unidec.UPP.UPPApp method) on_open_cdms_file() (unidec.UniDecCD.UniDecCDApp method) on_open_csv() (unidec.MetaUniDec.UniDecApp method) on_open_dir() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.UniChrom.ChromApp method) on_open_file() (unidec.GUniDec.UniDecApp method) (unidec.LipiDec.LipyDec.LipyDecWindow method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChrom.ChromApp method) (unidec.UniChromCD.UniChromCDApp method) (unidec.UniDecCD.UniDecCDApp method) on_open_global_html() (unidec.UPP.UPPApp method) on_open_hdf5() (unidec.metaunidec.image_plotter.ImagingWindow method) (unidec.UniChrom.ChromApp method) on_open_kernel() (unidec.GUniDec.UniDecApp method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_open_ud() (unidec.UniChrom.ChromApp method) on_open_unidec() (unidec.UPP.UPPApp method) on_p_select() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_paste_spectrum() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) on_pdf_report() (unidec.GUniDec.UniDecApp method) on_peak_selection() (unidec.MetaUniDec.UniDecApp method) on_peak_width_tool() (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniDecCD.UniDecCDApp method) on_peak_width_tool_help() (unidec.MetaUniDec.UniDecApp method) on_peak_window() (unidec.MetaUniDec.UniDecApp method) on_peaks() (unidec.modules.MassDefects.MassDefectWindow method) on_pick_peaks() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.UniChromCD.UniChromCDApp method) (unidec.UniDecCD.UniDecCDApp method) on_pick_peaks_individual() (unidec.UniChrom.ChromApp method) on_pick_scanpeaks() (unidec.MetaUniDec.MetaUniDecBase method) on_plate_viewer() (unidec.MetaUniDec.UniDecApp method) on_play() (unidec.modules.PlotAnimations.AnimationWindow method) on_plot() (unidec.modules.CDCal.CDCalDialog method) (unidec.modules.IM_windows.IMToolExtract method) (unidec.modules.IM_windows.IMTools method) (unidec.modules.ManualSelectionWindow.ManualSelection method) (unidec.modules.ManualSelectionWindow.SmashSelection method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) on_plot_all() (unidec.metaunidec.ultrameta.DataCollector method) on_plot_all_MD() (unidec.metaunidec.ultrameta.DataCollector method) on_plot_composite() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_plot_isotope_distribution() (unidec.GUniDec.UniDecApp method) on_plot_kernel() (unidec.UniChromCD.UniChromCDApp method) on_plot_nativeccs() (unidec.GUniDec.UniDecApp method) on_plot_offsets() (unidec.GUniDec.UniDecApp method) on_plot_peaks() (unidec.GUniDec.UniDecApp method) on_plot_window() (unidec.MetaUniDec.UniDecApp method) on_popup_color_peaks() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_color_peaks_all() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_consec_diff() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_eight() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_eleven() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_five() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_four() (unidec.DataCollector.ListCtrlPanel method) (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_image() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_label_areas_all() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_label_areas_select() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_label_names_all() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_label_names_select() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_nine() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_one() (unidec.DataCollector.ListCtrlPanel method) (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) (unidec.modules.ManualSelectionWindow.ManualListCtrlPanel method) (unidec.modules.ManualSelectionWindow.SmashListCtrlPanel method) on_popup_rename() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_scorecolor() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_seven() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_six() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_ten() (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_three() (unidec.DataCollector.ListCtrlPanel method) (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_twelve() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_twelve_full() (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_popup_two() (unidec.DataCollector.ListCtrlPanel method) (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) on_presets_help() (unidec.MetaUniDec.UniDecApp method) on_pw_check() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_raw_open() (unidec.GUniDec.UniDecApp method) on_redo() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_refresh() (unidec.UniDecCD.UniDecCDApp method) on_release() (unidec.modules.PlottingWindow.PlottingWindowBase method) on_replot() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow method) (unidec.modules.nativez.NativeZ method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.modules.UniList.UniListApp method) (unidec.UniChrom.ChromApp method) (unidec.UniChromCD.UniChromCDApp method) (unidec.UniDecCD.UniDecCDApp method) on_replot_chrom() (unidec.UniChromCD.UniChromCDApp method) on_repopulate() (unidec.MetaUniDec.MetaUniDecBase method) on_reset() (unidec.modules.nativez.NativeZ method) (unidec.modules.peakwidthtools.PeakTools1d method) (unidec.modules.peakwidthtools.PeakTools2d method) (unidec.modules.unidec_presbase.UniDecPres method) on_right_click() (unidec.DataCollector.ListCtrlPanel method) (unidec.metaunidec.gui_elements.list_ctrls.ListCtrlPanel method) (unidec.metaunidec.gui_elements.um_list_ctrl.ListCtrlPanel method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.gui_elements.HTCD_ListCtrls.ListCtrlPanel method) (unidec.modules.gui_elements.peaklistsort.PeakListCtrlPanel method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.ManualSelectionWindow.ManualListCtrlPanel method) (unidec.modules.ManualSelectionWindow.SmashListCtrlPanel method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.masstools.MatchListCtrl method) (unidec.modules.PlottingWindow.PlottingWindowBase method) (unidec.modules.UniList.UDListCtrl method) on_right_click_masslist() (unidec.modules.masstools.MassListCtrl method) on_right_click_oligolist() (unidec.modules.masstools.OligomerListCtrl method) on_run() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) (unidec.UPP.UPPApp method) on_run_all_ht() (unidec.UniChromCD.UniChromCDApp method) on_run_ccs() (unidec.UniChromCD.UniChromCDApp method) on_run_eic_ccs() (unidec.UniChromCD.UniChromCDApp method) on_run_eic_ht() (unidec.UniChromCD.UniChromCDApp method) on_run_selected() (unidec.UPP.UPPApp method) on_run_tic_ht() (unidec.UniChromCD.UniChromCDApp method) on_save() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_save_common_masses() (unidec.modules.masstools.MassSelection method) on_save_default() (unidec.modules.unidec_presbase.UniDecPres method) on_save_fig() (unidec.DataCollector.DataCollector method) (unidec.iFAMS.wxiFAMS.iFAMS_Window method) (unidec.LipiDec.LipyDec.LipyDecWindow method) (unidec.metaunidec.metafft.FFTWindow method) (unidec.metaunidec.ultrameta.DataCollector method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) (unidec.modules.PlotAnimations.AnimationWindow method) (unidec.modules.PlotBase.PlotBase method) (unidec.modules.PlottingWindow.PlottingWindowBase method) on_save_fig_dialog() (unidec.modules.PlottingWindow.PlottingWindowBase method) on_save_fig_pdf() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) (unidec.LipiDec.LipyDec.LipyDecWindow method) (unidec.metaunidec.metafft.FFTWindow method) (unidec.modules.fft_window.FFTWindow method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.MassDefects.MassDefectWindow method) on_save_figPDF() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.GridDecon.GridDeconWindow method) (unidec.modules.GridDecon2.GridDeconWindow method) on_save_figure_dialog() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_save_figure_eps() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_save_figure_pdf() (unidec.metaunidec.ultrameta.BarGraphWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_save_figure_png() (unidec.metaunidec.ultrameta.BarGraphWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_save_figure_small() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) on_save_file() (unidec.UPP.UPPApp method) on_save_state() (unidec.GUniDec.UniDecApp method) on_scans_selected() (unidec.modules.PlottingWindow.PlottingWindowBase method) on_score() (unidec.GUniDec.UniDecApp method) on_score2() (unidec.GUniDec.UniDecApp method) on_score_FDR() (unidec.GUniDec.UniDecApp method) on_score_label() (unidec.GUniDec.UniDecApp method) on_score_window() (unidec.GUniDec.UniDecApp method) on_select_massz_range() (unidec.UniChromCD.UniChromCDApp method) on_select_mzz_region() (unidec.UniChromCD.UniChromCDApp method) on_select_swoop() (unidec.UniChromCD.UniChromCDApp method) on_select_time_range() (unidec.UniChromCD.UniChromCDApp method) on_select_time_range_decon() (unidec.UniChromCD.UniChromCDApp method) on_selected_changed() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.tims_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) on_selection() (unidec.UniChrom.ChromApp method) on_selection_event() (unidec.UniChrom.ChromApp method) on_sig_fit() (unidec.metaunidec.ultrameta.DataCollector method) (unidec.MetaUniDec.UniDecApp method) on_sig_plot() (unidec.metaunidec.ultrameta.BarGraphWindow method) on_simulate() (unidec.modules.masstools.MassSelection method) on_single_charge_states() (unidec.UniChrom.ChromApp method) on_single_delete() (unidec.UniChrom.ChromApp method) on_single_differences() (unidec.UniChrom.ChromApp method) on_single_label_masses() (unidec.UniChrom.ChromApp method) on_size() (unidec.modules.PlottingWindow.PlottingWindowBase method) on_sliding_window() (unidec.UniChrom.ChromApp method) on_smash() (unidec.GUniDec.UniDecApp method) (unidec.UniDecCD.UniDecCDApp method) on_smash_window() (unidec.modules.unidec_presbase.UniDecPres method) on_spectra_color_change() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) on_stori() (unidec.UniDecCD.UniDecCDApp method) on_SubAndCharCalc() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) on_super_batch() (unidec.GUniDec.UniDecApp method) on_swoop_drag() (unidec.modules.PlottingWindow.PlottingWindowBase method) on_timepart() (unidec.UniChrom.ChromApp method) on_timer() (unidec.modules.unidec_presbase.UniDecPres method) on_timer2() (unidec.modules.unidec_presbase.UniDecPres method) on_total() (unidec.modules.Extract2D.Extract2DPlot method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) on_transfer() (unidec.modules.masstools.CommonMasses method) on_transfer_site() (unidec.modules.masstools.CommonMasses method) on_ultra_meta() (unidec.MetaUniDec.UniDecApp method) on_undo() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) on_unidec_button() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.MetaUniDecBase method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniDecCD.UniDecCDApp method) on_unidec_parameters() (unidec.MetaUniDec.UniDecApp method) on_unidec_path() (unidec.GUniDec.UniDecApp method) on_unidec_run() (unidec.UniChrom.ChromApp method) on_view_alt() (unidec.modules.masstools.MassSelection method) (unidec.modules.masstools.MatchListCtrl method) on_wap() (unidec.modules.Extract2D.Extract2DPlot method) on_wizard() (unidec.MetaUniDec.UniDecApp method) on_write_dialog() (unidec.modules.PlottingWindow.PlottingWindowBase method) on_write_hdf5() (unidec.GUniDec.UniDecApp method) on_ylabel() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) on_z_smooth() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) on_zerocharge_mass() (unidec.GUniDec.UniDecApp method) onChecked() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) OnDropFiles() (unidec.DataCollector.DCDropTarget method) (unidec.LipiDec.LipyDec.LipDropTarget method) (unidec.metaunidec.gui_elements.um_list_ctrl.DCDropTarget method) (unidec.metaunidec.mudview.MyFileDropTarget method) (unidec.modules.gui_elements.CDWindow.MyFileDropTarget method) (unidec.modules.gui_elements.ChromWindow.ChromDropTarget method) (unidec.modules.mainwindow.MyFileDropTarget method) (unidec.UPP.MyFileDropTarget method) onFocus() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) onIdle() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) OnInit() (unidec.modules.isolated_packages.spreadsheet.MyApp method) OnKey() (unidec.modules.isolated_packages.score_window.ScoreListCtrl method) onmove() (unidec.modules.isolated_packages.NoZoomSpan.NoZoomSpan method) (unidec.modules.isolated_packages.ZoomBox.ZoomBox method) (unidec.modules.isolated_packages.ZoomSpan.ZoomSpan method) (unidec.modules.plateplot.PlateFrame method) (unidec.modules.plateplot.PlatePlot method) (unidec.modules.plot_waterfall.Waterfall3DPlot method) (unidec.modules.plot_waterfall.WaterfallFrame method) onResize() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) OnSize() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.tims_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) open() (unidec.metaunidec.mudeng.MetaUniDec method) open_all_html() (unidec.batch.UniDecBatchProcessor method) open_cdms_file() (unidec.modules.CDEng.UniDecCD method) open_chrom() (unidec.modules.ChromEng.ChromEngine method) open_csv() (unidec.MetaUniDec.UniDecApp method) open_dir_dialog() (in module unidec.modules.isolated_packages.FileDialogs) open_file() (unidec.engine.UniDec method) (unidec.MetaUniDec.UniDecApp method) (unidec.modules.CDEng.UniDecCD method) (unidec.modules.HTEng.UniChromHT method) (unidec.modules.HTEng.UniDecCDHT method) (unidec.UniChrom.ChromApp method) open_file_dialog() (in module unidec.modules.isolated_packages.FileDialogs) open_file_in_meta() (unidec.metaunidec.ultrameta.DataCollector method) open_global_html() (unidec.batch.UniDecBatchProcessor method) open_hdf5() (unidec.DataCollector.DataCollector method) open_hdf5_file() (unidec.modules.ChromEng.ChromEngine method) (unidec.UniChrom.ChromApp method) open_in_browser() (unidec.UPP.HelpDlg method) open_link() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) open_most_recent() (unidec.modules.unidec_presbase.UniDecPres method) open_multiple_dir_dialog() (in module unidec.modules.isolated_packages.FileDialogs) open_multiple_files_dialog() (in module unidec.modules.isolated_packages.FileDialogs) open_results_file() (unidec.UPP.UPPApp method) open_single_dir_dialog() (in module unidec.modules.isolated_packages.FileDialogs) open_stori() (unidec.modules.CDEng.UniDecCD method) open_test_spectrum() (unidec.engine.UniDec method) open_unidec() (unidec.UPP.UPPApp method) OutlierTest() (unidec.modules.UniFit.KDmodel method) oxidation_analysis() (unidec.modules.unidec_enginebase.UniDecEngine method)

P

pad_data() (in module unidec.tools) pad_data_length() (in module unidec.tools) pad_two_power() (in module unidec.tools) pair_glyco() (unidec.modules.unidecstructure.OligomerContainer method) pair_glyco_matches() (in module unidec.tools) parse() (in module unidec.modules.mzmlparse_auto) parse_file() (in module unidec.metaunidec.meta_import_wizard.meta_data_importer) (in module unidec.modules.tims_import_wizard.data_importer) (unidec.metaunidec.mudeng.MetaUniDec method) parse_file_name() (unidec.modules.HTEng.HTEng method) parse_fmoddf() (in module unidec.modules.matchtools) parse_global_fixed_mod() (in module unidec.modules.matchtools) parse_multiple() (in module unidec.modules.mzmlparse_auto) parse_multiple_files() (unidec.metaunidec.mudeng.MetaUniDec method) parse_names() (in module unidec.LipiDec.AddFeaturestoDF) parse_vmoddf() (in module unidec.modules.matchtools) pass_data_in() (unidec.engine.UniDec method) paste() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) PDFTexReport() (in module unidec.modules.isolated_packages.texmaker) (in module unidec.modules.isolated_packages.texmaker_nmsgsb) Peak (class in unidec.modules.peakstructure) peak_extract() (unidec.modules.nativez.NativeZ method) peak_plots() (unidec.MetaUniDec.UniDecApp method) (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChrom.ChromApp method) peak_selection() (unidec.metaunidec.mudhelp.HelpDlg method) peak_width_tool_help() (unidec.metaunidec.mudhelp.HelpDlg method) peak_window() (unidec.metaunidec.mudhelp.HelpDlg method) peakdetect() (in module unidec.tools) (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) peakdetect_nonlinear() (in module unidec.tools) PeakListCtrlPanel (class in unidec.modules.gui_elements.peaklistsort) Peaks (class in unidec.modules.peakstructure) peaks_error_FWHM() (in module unidec.tools) peaks_error_mean() (in module unidec.tools) peaks_error_replicates() (unidec.metaunidec.mudeng.MetaUniDec method) peaks_heights() (unidec.metaunidec.mudeng.MetaUniDec method) PeakTools1d (class in unidec.modules.peakwidthtools) PeakTools2d (class in unidec.modules.peakwidthtools) perform_fit() (unidec.modules.MassFitter.MassFitter method) pick_peaks() (unidec.engine.UniDec method) (unidec.metaunidec.mudeng.MetaUniDec method) (unidec.UniDecCD.UniDecCDApp method) pick_scanpeaks() (unidec.metaunidec.mudeng.MetaUniDec method) pks_csscore() (unidec.engine.UniDec method) pks_fscore() (unidec.engine.UniDec method) pks_mscore() (unidec.engine.UniDec method) pks_uscore() (unidec.engine.UniDec method) PlateFrame (class in unidec.modules.plateplot) PlatePlot (class in unidec.modules.plateplot) Plot1d (class in unidec.modules.PlottingWindow) Plot1dBase (class in unidec.modules.plot1d) plot2() (unidec.modules.DoubleDec.DoubleDec method) Plot2d (class in unidec.modules.PlottingWindow) Plot2dBase (class in unidec.modules.plot2d) plot_add() (unidec.modules.CDEng.UniDecCD method) plot_chrom_shading() (unidec.UniChrom.ChromApp method) plot_chromatograms() (unidec.UniChromCD.UniChromCDApp method) plot_function() (in module unidec.iFAMS.iFAMSfun) plot_hist() (unidec.modules.CDEng.UniDecCD method) plot_hits() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) plot_integral() (unidec.modules.unidec_presbase.UniDecPres method) plot_mass_for_eic() (unidec.UniChromCD.UniChromCDApp method) plot_mz_values() (unidec.metaunidec.image_plotter.ImagingWindow method) plot_mzmass_hist() (unidec.modules.CDEng.UniDecCD method) plot_native_z() (unidec.modules.plot2d.Plot2dBase method) plot_single_mass() (unidec.UniChrom.ChromApp method) plot_single_mz() (unidec.UniChrom.ChromApp method) plot_single_pks() (unidec.UniChrom.ChromApp method)

plot_sums() (unidec.MetaUniDec.MetaUniDecBase method) plot_theo_mass() (unidec.modules.unidec_presbase.UniDecPres method) plot_window() (unidec.metaunidec.mudhelp.HelpDlg method) plot_zoffs() (unidec.modules.nativez.NativeZ method) plotadd() (unidec.modules.plot1d.Plot1dBase method) plotadddot() (unidec.modules.PlotBase.PlotBase method) PlotAny (class in unidec.modules.PlottingWindow) PlotBase (class in unidec.modules.PlotBase) PlotHist() (unidec.modules.UniFit.KDmodel method) plotkernel() (unidec.UniDecCD.UniDecCDApp method) plotnoise() (unidec.UniDecCD.UniDecCDApp method) PlotPeaks() (unidec.modules.DoubleDec.DoubleDec method) plotrefreshtop() (unidec.modules.plot1d.Plot1dBase method) PlottingWindowBase (class in unidec.modules.PlottingWindow) PlotTrace() (unidec.modules.UniFit.KDmodel method) png_to_html() (in module unidec.modules.html_writer) poisson() (in module unidec.modules.fitting) poisson_fit() (in module unidec.modules.fitting) poisson_mono_di() (in module unidec.modules.fitting) poly_fit() (in module unidec.modules.fitting) polydispersity_index() (in module unidec.tools) (unidec.modules.unidec_enginebase.UniDecEngine method) polynomial_background_subtract() (in module unidec.tools) pop_from_peaks() (unidec.modules.masstools.MassSelection method) pop_oligo_all() (unidec.modules.masstools.MassSelection method) pop_oligo_iso() (unidec.modules.masstools.MassSelection method) pop_oligo_sites() (unidec.modules.masstools.MassSelection method) populate() (unidec.DataCollector.XValueListCtrl method) (unidec.DataCollector.YValueListCtrl method) (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.XValueListCtrl method) (unidec.metaunidec.gui_elements.um_list_ctrl.YValueListCtrl method) (unidec.modules.AutocorrWindow.CorrListCtrl method) (unidec.modules.CDCal.CDListCtrl method) (unidec.modules.gui_elements.HTCD_ListCtrls.YValueListCtrl method) (unidec.modules.IM_windows.IMListCtrl method) (unidec.modules.isolated_packages.score_window.ScoreFrame method) (unidec.modules.isolated_packages.score_window.ScoreListCtrl method) (unidec.modules.ManualSelectionWindow.ManualListCrtl method) (unidec.modules.ManualSelectionWindow.SmashListCrtl method) (unidec.modules.masstools.CommonMasses method) (unidec.modules.masstools.MassListCtrl method) (unidec.modules.masstools.MatchListCtrl method) (unidec.modules.masstools.OligomerListCtrl method) (unidec.modules.plateplot.PlatePlot method) (unidec.modules.UniList.UDListCtrl method) (unidec.modules.UniList.UniListWindow method) populate_list() (unidec.modules.nativez.NativeZ method) (unidec.modules.UniList.UniListApp method) populate_tree() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.tims_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) post_extract() (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) predict_apex_mono_diff() (in module unidec.modules.isotopetools) predict_charge() (in module unidec.tools) prep_hist() (unidec.modules.HTEng.UniDecCDHT method) prep_time_domain() (unidec.modules.HTEng.UniDecCDHT method) presets_help() (unidec.metaunidec.mudhelp.HelpDlg method) press() (unidec.modules.isolated_packages.NoZoomSpan.NoZoomSpan method) (unidec.modules.isolated_packages.ZoomBox.ZoomBox method) (unidec.modules.isolated_packages.ZoomSpan.ZoomSpan method) print_config() (unidec.modules.unidecstructure.UniDecConfig method) process_data() (unidec.engine.UniDec method) (unidec.metaunidec.mudeng.MetaUniDec method) (unidec.modules.CDEng.UniDecCD method) process_data_2d() (in module unidec.modules.IM_functions) process_data_scans() (unidec.modules.HTEng.UniDecCDHT method) process_df() (unidec.LipiDec.LipyDec.LipyDecWindow method) process_from_wizard() (in module unidec.modules.tims_import_wizard.data_importer) process_mass_data() (unidec.engine.UniDec method) psfit() (in module unidec.modules.fitting)

Q

quadraticmodel() (in module unidec.modules.CDEng) query() (unidec.modules.isolated_packages.mql_tool.MQL_TOOL method)

quick_auto() (unidec.modules.unidec_presbase.UniDecPres method) (unidec.UniChrom.ChromApp method) quit_application() (unidec.modules.unidec_presbase.UniDecPres method)

R

range_overlap() (in module unidec.modules.ManualSelectionWindow) raw_file_info() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl.TreeCtrlPanel method) (unidec.modules.tims_import_wizard.import_wizard_treectrl.TreeCtrlPanel method) raw_process() (unidec.engine.UniDec method) read_attr() (in module unidec.metaunidec.ultrameta) (in module unidec.modules.hdf5_tools) (in module unidec.modules.unidecstructure) read_fasta() (in module unidec.modules.biopolymertools) read_hdf5() (unidec.metaunidec.mudstruct.Spectrum method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidecstructure.DataContainer method) (unidec.modules.unidecstructure.UniDecConfig method) read_recent() (unidec.modules.unidec_presbase.UniDecPres method) read_tolerance() (unidec.modules.masstools.MassSelection method) realdata() (in module unidec.iFAMS.iFAMSfun) recolor() (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) recolor_spectra() (unidec.MetaUniDec.MetaUniDecBase method) recursive_repack_hdf5() (unidec.MetaUniDec.MetaUniDecBase method) redo() (unidec.modules.unidec_enginebase.UniDecEngine method) refresh_plot() (unidec.modules.PlotAnimations.AnimationWindow method) register() (in module unidec.modules.data_reader) (unidec.modules.unidec_presbase.UniDecPres method) rel_quant() (in module unidec.LipiDec.SkyQuant) release() (unidec.modules.isolated_packages.NoZoomSpan.NoZoomSpan method) (unidec.modules.isolated_packages.ZoomBox.ZoomBox method) (unidec.modules.isolated_packages.ZoomSpan.ZoomSpan method) remake_mainwindow() (unidec.GUniDec.UniDecApp method) (unidec.MetaUniDec.UniDecApp method) (unidec.UniDecCD.UniDecCDApp method) remove_columns() (in module unidec.batch) remove_data() (unidec.metaunidec.mudstruct.MetaDataSet method) remove_empty() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) remove_middle_zeros() (in module unidec.tools) remove_noise() (in module unidec.tools) remove_row() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.tims_import_wizard.import_wizard_grid.WizardGrid method) removeduplicates() (in module unidec.tools) rename_col() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) rename_column() (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) rename_var1() (unidec.MetaUniDec.MetaUniDecBase method) rename_var2() (unidec.MetaUniDec.MetaUniDecBase method) reorder() (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) repack_hdf5() (unidec.MetaUniDec.MetaUniDecBase method) repaint() (unidec.modules.PlotBase.PlotBase method) (unidec.modules.PlottingWindow.PlottingWindowBase method)

replace_dataset() (in module unidec.modules.hdf5_tools) replace_dataset_strings() (in module unidec.modules.hdf5_tools) replot() (unidec.modules.plateplot.PlateFrame method) (unidec.modules.SubDiv.SubDivFrame method) repopulate() (unidec.metaunidec.gui_elements.list_ctrls.YValueListCtrl method) (unidec.modules.gui_elements.HTCD_ListCtrls.YValueListCtrl method) (unidec.modules.masstools.CommonMasses method) reset_config() (unidec.modules.unidec_enginebase.UniDecEngine method) reset_hidden_columns() (unidec.UPP.UPPApp method) reset_vars() (unidec.modules.ChromEng.ChromEngine method) reset_zoom() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.PlotBase.PlotBase method) ResetVisible() (in module unidec.modules.isolated_packages.ZoomCommon) resize() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) (unidec.modules.mainwindow.Mainwindow method) Return() (unidec.modules.UniFit.KDmodel method) return_data() (unidec.modules.nativez.ColorList method) rfft() (in module unidec.tools) right_click() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) round_to_nearest() (in module unidec.tools) rt_plot() (unidec.LipiDec.LipyDec.LipyDecWindow method) run() (unidec.LipiDec.Infusion.LipiDecEng.LipiDecRunner method) run_all_ht() (unidec.modules.HTEng.UniDecCDHT method) (unidec.UniChromCD.UniChromCDApp method) run_all_mass_transform() (unidec.UniChromCD.UniChromCDApp method) run_autocorr() (unidec.modules.AutocorrWindow.AutocorrWindow method) run_correct_pair() (unidec.batch.UniDecBatchProcessor method) run_dar() (unidec.batch.UniDecBatchProcessor method) run_decon() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) run_deconvolution() (unidec.modules.CDEng.UniDecCD method) run_demultiplex() (unidec.modules.HTEng.HTEng method) run_df() (unidec.batch.UniDecBatchProcessor method) run_eic_ht() (unidec.UniChromCD.UniChromCDApp method) run_file() (unidec.batch.UniDecBatchProcessor method) run_get_data() (in module unidec.modules.tims_import_wizard.data_importer) run_hdf5() (unidec.metaunidec.ultrameta.DataCollector method) run_launcher() (in module unidec.Launcher) run_multip() (unidec.modules.Extract2D.Extract2DPlot method) run_tic_ht() (unidec.UniChromCD.UniChromCDApp method) run_unidec() (unidec.engine.UniDec method) (unidec.metaunidec.mudeng.MetaUniDec method) RunBootstrap() (unidec.modules.UniFit.KDmodel method) RunKDFit() (unidec.modules.UniFit.KDmodel method)

S

safedivide() (in module unidec.modules.CDEng) (in module unidec.modules.UniFit) (in module unidec.tools) safedivide1() (in module unidec.tools) safemax() (unidec.metaunidec.mudstruct.MetaDataSet method) save_all_figures() (unidec.metaunidec.ultrameta.BarGraphWindow method) (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) save_chroms() (unidec.UniChromCD.UniChromCDApp method) save_default() (unidec.modules.unidec_enginebase.UniDecEngine method) save_fig() (unidec.modules.PlotAnimations.AnimationWindow method) save_figure() (unidec.modules.PlotBase.PlotBase method) save_figures() (unidec.modules.nativez.NativeZ method) save_file() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) save_file_dialog() (in module unidec.modules.isolated_packages.FileDialogs) save_state() (unidec.engine.UniDec method) SaveFigureDialog (class in unidec.modules.miscwindows) savetxt() (in module unidec.tools) savgol() (in module unidec.tools) savgol_background_subtract() (in module unidec.tools) scanpeaks_extracts() (unidec.metaunidec.mudeng.MetaUniDec method) scans_selected() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) ScanSelectedEvent (class in unidec.modules.PlottingWindow) scatterplottop() (unidec.modules.plot1d.Plot1dBase method) score_minimum() (in module unidec.engine) score_plots() (in module unidec.modules.isolated_packages.score_window) score_plots2() (in module unidec.modules.isolated_packages.score_window) score_window() (in module unidec.modules.isolated_packages.score_window) ScoreFrame (class in unidec.modules.isolated_packages.score_window) ScoreListCtrl (class in unidec.modules.isolated_packages.score_window) scr() (in module unidec.modules.isolated_packages.score_window) scr2() (in module unidec.modules.isolated_packages.score_window) sd_filter() (in module unidec.LipiDec.SkyQuant) search_by_id() (in module unidec.modules.mzMLimporter) search_extern() (in module unidec.modules.tims_import_wizard.data_importer) select_all() (unidec.UniChrom.ChromApp method) select_ht_range() (unidec.modules.HTEng.UniDecCDHT method) (unidec.UniChromCD.UniChromCDApp method) select_raw_range() (unidec.modules.HTEng.UniDecCDHT method) SelectMarker (class in unidec.metaunidec.gui_elements.um_list_ctrl) (class in unidec.modules.gui_elements.peaklistsort) set_active() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) set_angle() (unidec.modules.plot_waterfall.Waterfall3DPlot method) set_aspect() (unidec.modules.PlotBase.PlotBase method) set_auto_ylim() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) set_avg_rt_mz() (in module unidec.LipiDec.SkyQuant) set_avg_std() (in module unidec.LipiDec.SkyQuant) set_class_name() (in module unidec.LipiDec.AddFeaturestoDF) set_clipping() (in module unidec.modules.isolated_packages.ZoomCommon) (unidec.modules.isolated_packages.ZoomBox.ZoomBox method) set_col_headers() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) set_col_labels() (unidec.modules.isolated_packages.spreadsheet.SpreadsheetPanel method) set_color() (unidec.modules.PlotBase.PlotBase method) set_colors() (in module unidec.LipiDec.SkyQuant) set_df() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) set_labels() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.tims_import_wizard.import_wizard_grid.WizardGrid method) set_manual() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) set_manual_y() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) set_nticks() (unidec.modules.PlotBase.PlotBase method) set_param_from_row() (in module unidec.batch) set_resize() (unidec.modules.PlottingWindow.PlottingWindowBase method) set_row_merge() (in module unidec.batch) set_row_values() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) set_stds() (in module unidec.LipiDec.SkyQuant) set_tails() (in module unidec.LipiDec.AddFeaturestoDF) set_tickcolor() (unidec.modules.PlotBase.PlotBase method) set_timepad_index() (unidec.modules.HTEng.HTEng method) set_tolerance() (unidec.modules.masstools.MassSelection method) set_xlim() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) set_ylim() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) set_zoomvals() (unidec.modules.PlotBase.PlotBase method) setUp() (unidec.metaunidec.test_MUD.TestGUI class method) setup_demultiplex() (unidec.modules.HTEng.HTEng method) setup_filenames() (unidec.metaunidec.mudeng.MetaUniDec method) setup_frame() (unidec.ImportWizard.ImportWizard method) (unidec.metaunidec.meta_import_wizard.meta_import_wizard.ImportWizard method) setup_ft() (unidec.modules.HTEng.HTEng method) setup_ht() (unidec.modules.HTEng.HTEng method) setup_main_panel() (unidec.modules.gui_elements.CDWindow.CDMainwindow method) (unidec.modules.mainwindow.Mainwindow method) setup_msmooth() (unidec.modules.CDEng.UniDecCD method) setup_panel() (unidec.modules.CDCal.CDCalDialog method) (unidec.modules.IM_windows.IMTools method) setup_peaks() (unidec.engine.UniDec method) (unidec.metaunidec.mudstruct.Spectrum method)

setup_shortcuts() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) setup_tab_box() (in module unidec.modules.miscwindows) setup_tool_tips() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) setup_window() (unidec.metaunidec.ultrameta.BarGraphWindow method) setup_window_generic() (unidec.metaunidec.ultrameta.BarGraphWindow method) setup_zoom() (unidec.modules.PlotBase.PlotBase method) (unidec.modules.PlottingWindow.PlottingWindowBase method) setup_zsmooth() (unidec.modules.CDEng.UniDecCD method) setupmainpanel() (unidec.metaunidec.mudview.Mainwindow method) SetupModel() (unidec.modules.UniFit.KDmodel method) SetupModelAgg() (unidec.modules.UniFit.KDmodel method) shade_plots() (unidec.DataCollector.DataCollector method) Shell (class in unidec.Launcher) show_all_columns() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) show_columns_by_keyword() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) showPopupMenu() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.tims_import_wizard.import_wizard_grid.WizardGrid method) shrink_all_figures() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) shrink_figure() (unidec.modules.gui_elements.mainwindow_base.MainwindowBase method) sig_fit() (in module unidec.modules.fitting) sim_dist() (unidec.modules.CDEng.UniDecCD method) simchargefit() (in module unidec.tools) simp_convert() (unidec.modules.CDEng.UniDecCD method) simp_string_to_value() (in module unidec.tools) simple_extract() (in module unidec.tools) simple_mass_defect() (in module unidec.tools) simple_params() (in module unidec.modules.MassSpecBuilder) simple_spectrum() (in module unidec.modules.MassSpecBuilder) simple_spectrum2() (in module unidec.modules.MassSpecBuilder) single_cwt() (in module unidec.tools) single_eng() (unidec.modules.UniList.UniListApp method) SingleInputDialog (class in unidec.modules.miscwindows) site_match() (in module unidec.modules.matchtools) sitematch_to_excel() (in module unidec.modules.matchtools) sitematch_to_target() (in module unidec.modules.matchtools) size_handler() (unidec.modules.PlottingWindow.PlottingWindowBase method) slopefunc() (in module unidec.modules.CDEng) smartdecode() (in module unidec.tools) smash() (in module unidec.tools) smash2d() (in module unidec.tools) SmashListCrtl (class in unidec.modules.ManualSelectionWindow) SmashListCtrlPanel (class in unidec.modules.ManualSelectionWindow) SmashSelection (class in unidec.modules.ManualSelectionWindow) smooth_2d() (in module unidec.modules.IM_functions) sneaky_resize() (unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid.WizardGrid method) (unidec.modules.tims_import_wizard.import_wizard_grid.WizardGrid method) softmax() (in module unidec.modules.CDEng) solve_for_mass() (in module unidec.tools) sort_by_column() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) sort_by_selected_column() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) sort_df() (unidec.LipiDec.Infusion.LipiDecEng.LipiDec method) sort_sitematches_by() (in module unidec.modules.matchtools) sortarray() (in module unidec.modules.UniFit) spacing() (in module unidec.iFAMS.iFAMSfun) sparse() (in module unidec.tools) special_clip() (in module unidec.modules.isolated_packages.ZoomCommon) Spectrum (class in unidec.metaunidec.mudstruct) split_and_strip() (in module unidec.modules.tims_import_wizard.data_importer) splitdis() (in module unidec.modules.fitting) splitdis_fit() (in module unidec.modules.fitting) SpreadsheetFrame (class in unidec.modules.isolated_packages.spreadsheet) SpreadsheetPanel (class in unidec.modules.isolated_packages.spreadsheet) start() (unidec.modules.unidec_presbase.UniDecPres method) stepmax() (in module unidec.tools) stickconv() (in module unidec.tools) sticks_only() (in module unidec.tools) string_to_int() (in module unidec.tools) string_to_value() (in module unidec.tools) strip_char_from_string() (in module unidec.tools) sub_div() (unidec.modules.unidec_presbase.UniDecPres method) sub_div_window() (unidec.modules.unidec_presbase.UniDecPres method) subdiv() (unidec.modules.SubDiv.SubDivFrame method) SubDivFrame (class in unidec.modules.SubDiv) subtract_and_divide() (in module unidec.tools) subtract_complex_2d() (in module unidec.modules.IM_functions) subunit() (in module unidec.iFAMS.iFAMSfun) sum_comp_only() (in module unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator) sum_masses() (unidec.metaunidec.mudeng.MetaUniDec method) sum_region() (unidec.metaunidec.image_plotter.ImagingWindow method) super_delete() (unidec.modules.nativez.ColorList method) switch_label() (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) SwoopDragEvent (class in unidec.modules.PlottingWindow)

T

tearDown() (unidec.metaunidec.test_MUD.TestGUI method) test_auto_MS() (unidec.metaunidec.test_MUD.TestGUI method) test_flip() (unidec.metaunidec.test_MUD.TestGUI method) test_new_file() (unidec.metaunidec.test_MUD.TestGUI method) test_presets_resets() (unidec.metaunidec.test_MUD.TestGUI method) test_unidec_paths() (unidec.metaunidec.test_MUD.TestGUI method) TestGUI (class in unidec.metaunidec.test_MUD) TestWindow (class in unidec.modules.isolated_packages.preset_manager) textremove() (unidec.modules.PlotBase.PlotBase method) tic_ht() (unidec.modules.HTEng.UniChromHT method) (unidec.modules.HTEng.UniDecCDHT method) to_array() (unidec.modules.unidecstructure.ChromatogramContainer method) to_df() (unidec.modules.hramtools.HRAMResult method) (unidec.modules.peakstructure.Peaks method)

to_html_collapsible() (in module unidec.modules.html_writer) to_html_paragraph() (in module unidec.modules.html_writer) to_row() (unidec.modules.unidecstructure.Chromatogram method) tofloat() (in module unidec.modules.gui_elements.peaklistsort) transform() (unidec.modules.CDEng.UniDecCD method) transform_array() (unidec.modules.HTEng.UniDecCDHT method) transform_dt_ccs_array() (unidec.modules.HTEng.UniDecCDHT method) transform_mzmass() (unidec.modules.CDEng.UniDecCD method) transform_stacks() (unidec.modules.HTEng.UniDecCDHT method) translate() (in module unidec.LipiDec.SkyQuant) translate_selection() (unidec.modules.gui_elements.HTCD_ListCtrls.YValueListCtrl method) TreeCtrl (class in unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl) (class in unidec.modules.tims_import_wizard.import_wizard_treectrl) TreeCtrlPanel (class in unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl) (class in unidec.modules.tims_import_wizard.import_wizard_treectrl)

U

UDListCtrl (class in unidec.modules.UniList) UDListCtrlPanel (class in unidec.modules.UniList) undo() (unidec.modules.isolated_packages.spreadsheet.MyGrid method) (unidec.modules.unidec_enginebase.UniDecEngine method) UniChromCDApp (class in unidec.UniChromCD) UniChromHT (class in unidec.modules.HTEng) unidec module UniDec (class in unidec.engine) unidec.batch module unidec.DataCollector module unidec.engine module unidec.GUniDec module unidec.iFAMS module unidec.iFAMS.iFAMSfun module unidec.iFAMS.wxiFAMS module unidec.ImportWizard module unidec.Launcher module unidec.LipiDec module unidec.LipiDec.AddFeaturestoDF module unidec.LipiDec.Infusion module unidec.LipiDec.Infusion.Formulas module unidec.LipiDec.Infusion.LipiDec_DataBaseGenerator module unidec.LipiDec.Infusion.LipiDecEng module unidec.LipiDec.Infusion.ShotgunLipiDec module unidec.LipiDec.Infusion.ShotgunLipiDecMTM module unidec.LipiDec.LipyDec module unidec.LipiDec.SkyQuant module unidec.MetaUniDec module unidec.metaunidec module unidec.metaunidec.gui_elements module unidec.metaunidec.gui_elements.list_ctrls module unidec.metaunidec.gui_elements.ud_cont_meta module unidec.metaunidec.gui_elements.ud_menu_meta module unidec.metaunidec.gui_elements.um_list_ctrl module unidec.metaunidec.image_plotter module unidec.metaunidec.imzml_reader module unidec.metaunidec.meta_import_wizard module unidec.metaunidec.meta_import_wizard.meta_data_importer module unidec.metaunidec.meta_import_wizard.meta_import_wizard module unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid module unidec.metaunidec.meta_import_wizard.meta_import_wizard_treectrl module unidec.metaunidec.meta_import_wizard.MetaTagTypes module unidec.metaunidec.metafft module unidec.metaunidec.mudeng module unidec.metaunidec.mudhelp module unidec.metaunidec.mudstruct module unidec.metaunidec.mudview module unidec.metaunidec.test_MUD module unidec.metaunidec.ultrameta module unidec.modules module unidec.modules.AutocorrWindow module unidec.modules.biopolymertools module unidec.modules.CDCal module unidec.modules.CDEng module unidec.modules.ChromEng module unidec.modules.ColorPlot module unidec.modules.data_reader module unidec.modules.DoubleDec module unidec.modules.Extract2D module unidec.modules.fft_window module unidec.modules.fitting module unidec.modules.GridDecon module unidec.modules.GridDecon2 module unidec.modules.gui_elements module unidec.modules.gui_elements.CD_controls module unidec.modules.gui_elements.CDMenu module unidec.modules.gui_elements.CDWindow module unidec.modules.gui_elements.ChromWindow module unidec.modules.gui_elements.HTCD_ListCtrls module unidec.modules.gui_elements.mainwindow_base module unidec.modules.gui_elements.peaklistsort module unidec.modules.gui_elements.ud_controls module unidec.modules.gui_elements.ud_menu module unidec.modules.hdf5_tools module unidec.modules.hramtools module unidec.modules.HTEng module unidec.modules.html_writer module unidec.modules.i2ms_importer module unidec.modules.IM_functions module unidec.modules.IM_windows module unidec.modules.isolated_packages module unidec.modules.isolated_packages.biopolymer_calculator module unidec.modules.isolated_packages.FileDialogs module unidec.modules.isolated_packages.MD_compare module

unidec.modules.isolated_packages.MD_Fitter module unidec.modules.isolated_packages.mql_tool module unidec.modules.isolated_packages.navia_importer module unidec.modules.isolated_packages.NoZoomSpan module unidec.modules.isolated_packages.preset_manager module unidec.modules.isolated_packages.score_window module unidec.modules.isolated_packages.spreadsheet module unidec.modules.isolated_packages.texmaker module unidec.modules.isolated_packages.texmaker_nmsgsb module unidec.modules.isolated_packages.ZoomBox module unidec.modules.isolated_packages.ZoomCommon module unidec.modules.isolated_packages.ZoomSpan module unidec.modules.isotopetools module unidec.modules.mainwindow module unidec.modules.ManualSelectionWindow module unidec.modules.MassDefectExtractor module unidec.modules.MassDefects module unidec.modules.MassFitter module unidec.modules.MassSpecBuilder module unidec.modules.masstools module unidec.modules.matchtools module unidec.modules.miscwindows module unidec.modules.mzMLimporter module unidec.modules.mzmlparse_auto module unidec.modules.mzXML_importer module unidec.modules.NanodiscBuilder module unidec.modules.nativez module unidec.modules.peakstructure module unidec.modules.peakwidthtools module unidec.modules.plateplot module unidec.modules.plot1d module unidec.modules.plot2d module unidec.modules.plot3d module unidec.modules.plot_waterfall module unidec.modules.PlotAnimations module unidec.modules.PlotBase module unidec.modules.PlottingWindow module unidec.modules.SubDiv module unidec.modules.tims_import_wizard module unidec.modules.tims_import_wizard.data_importer module unidec.modules.tims_import_wizard.get_data_wrapper module unidec.modules.tims_import_wizard.import_wizard_grid module unidec.modules.tims_import_wizard.import_wizard_treectrl module unidec.modules.tims_import_wizard.TagTypes module unidec.modules.unidec_enginebase module unidec.modules.unidec_presbase module unidec.modules.unidecstructure module unidec.modules.UniFit module unidec.modules.UniList module unidec.tools module unidec.UniChrom module unidec.UniChromCD module unidec.UniDecCD module unidec.UPP module unidec_call() (in module unidec.tools) unidec_imports() (unidec.engine.UniDec method) unidec_parameters() (unidec.metaunidec.mudhelp.HelpDlg method) UniDecApp (class in unidec.GUniDec) (class in unidec.MetaUniDec) UniDecBatchProcessor (class in unidec.batch) UniDecCD (class in unidec.modules.CDEng) UniDecCDApp (class in unidec.UniDecCD) UniDecCDHT (class in unidec.modules.HTEng) UniDecConfig (class in unidec.modules.unidecstructure) UniDecEngine (class in unidec.modules.unidec_enginebase) UniDecLauncher (class in unidec.Launcher) UniDecPres (class in unidec.modules.unidec_presbase) UniListApp (class in unidec.modules.UniList) UniListWindow (class in unidec.modules.UniList) unsparse() (in module unidec.tools) update() (unidec.metaunidec.image_plotter.ImagingWindow method) (unidec.modules.isolated_packages.NoZoomSpan.NoZoomSpan method) (unidec.modules.isolated_packages.ZoomBox.ZoomBox method) (unidec.modules.isolated_packages.ZoomSpan.ZoomSpan method) (unidec.modules.MassDefectExtractor.MassDefectExtractorWindow method) (unidec.modules.nativez.NativeZ method) (unidec.modules.PlotAnimations.AnimationWindow method) update_background() (unidec.modules.isolated_packages.NoZoomSpan.NoZoomSpan method) (unidec.modules.isolated_packages.ZoomCommon.ZoomCommon method) update_check2() (unidec.LipiDec.LipyDec.LipyDecWindow method) update_check3() (unidec.LipiDec.LipyDec.LipyDecWindow method) update_checks() (unidec.LipiDec.LipyDec.LipyDecWindow method) update_config() (unidec.metaunidec.ultrameta.DataCollector method) update_demultiplex_mode() (unidec.modules.gui_elements.CD_controls.main_controls method) update_framerate() (unidec.modules.PlotAnimations.AnimationWindow method) update_get() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) update_gui() (unidec.metaunidec.ultrameta.DataCollector method) (unidec.modules.UniList.UniListApp method) update_hdf5() (unidec.metaunidec.ultrameta.DataCollector method) (unidec.UniChrom.ChromApp method) update_history() (unidec.modules.unidec_enginebase.UniDecEngine method) update_list() (unidec.modules.nativez.NativeZ method) update_plot() (unidec.modules.PlotAnimations.AnimationWindow method) update_progress() (unidec.UPP.UPPApp method) update_quick_controls() (unidec.metaunidec.gui_elements.ud_cont_meta.main_controls method) (unidec.modules.gui_elements.CD_controls.main_controls method) (unidec.modules.gui_elements.ud_controls.main_controls method) update_recent() (unidec.metaunidec.gui_elements.ud_menu_meta.meta_menu method) (unidec.modules.gui_elements.CDMenu.CDMenu method) (unidec.modules.gui_elements.ud_menu.main_menu method) update_set() (unidec.DataCollector.DataCollector method) (unidec.metaunidec.ultrameta.DataCollector method) update_style() (unidec.modules.PlotBase.PlotBase method) update_var_array() (unidec.metaunidec.mudstruct.MetaDataSet method) UPP_check_peaks() (in module unidec.modules.matchtools) UPPApp (class in unidec.UPP)

V

voigt() (in module unidec.modules.fitting)

voigt_fit() (in module unidec.modules.fitting)

W

waplot() (unidec.modules.DoubleDec.DoubleDec method) warn() (unidec.modules.unidec_presbase.UniDecPres method) waterfall() (unidec.modules.plot_waterfall.Waterfall3DPlot method) Waterfall3DPlot (class in unidec.modules.plot_waterfall) WaterfallFrame (class in unidec.modules.plot_waterfall) waters_convert2() (in module unidec.tools) weighted_avg() (in module unidec.tools) weighted_std() (in module unidec.tools) weighted_std_2() (in module unidec.modules.fitting) WeightedAvgs() (unidec.modules.DoubleDec.DoubleDec method) wide_sse() (in module unidec.tools) win_autocorr_grid() (in module unidec.tools) win_fft_diff() (in module unidec.tools) win_fft_grid() (in module unidec.tools) win_fft_grid_single() (in module unidec.tools) windowed_autocorr() (in module unidec.tools)

windowed_fft() (in module unidec.tools) windowed_fft_single() (in module unidec.tools) WizardGrid (class in unidec.metaunidec.meta_import_wizard.meta_import_wizard_grid) (class in unidec.modules.tims_import_wizard.import_wizard_grid) wrap_to_grid() (in module unidec.modules.html_writer) write_data() (unidec.modules.PlotBase.PlotBase method) write_hdf5() (unidec.metaunidec.mudstruct.Spectrum method) (unidec.modules.unidec_enginebase.UniDecEngine method) (unidec.modules.unidecstructure.DataContainer method) (unidec.modules.unidecstructure.UniDecConfig method) write_peaks() (unidec.batch.UniDecBatchProcessor method) write_to_hdf5() (unidec.metaunidec.imzml_reader.Imzml_Reader method) write_to_html() (in module unidec.modules.html_writer) write_to_imzML() (unidec.metaunidec.mudeng.MetaUniDec method) write_to_recent() (unidec.modules.unidec_presbase.UniDecPres method) write_xlsx() (unidec.batch.UniDecBatchProcessor method)

X

XValueListCtrl (class in unidec.DataCollector) (class in unidec.metaunidec.gui_elements.um_list_ctrl)

Y

YValueListCtrl (class in unidec.DataCollector) (class in unidec.metaunidec.gui_elements.list_ctrls) (class in unidec.metaunidec.gui_elements.um_list_ctrl) (class in unidec.modules.gui_elements.HTCD_ListCtrls)

Z

zero_charge() (unidec.iFAMS.wxiFAMS.iFAMS_Window method) zerocharge() (in module unidec.iFAMS.iFAMSfun) zip_folder() (in module unidec.tools) zipdir() (in module unidec.tools) Zoffset (class in unidec.modules.nativez) ZoomBox (class in unidec.modules.isolated_packages.ZoomBox)

ZoomCommon (class in unidec.modules.isolated_packages.ZoomCommon) zoomout() (unidec.modules.isolated_packages.ZoomBox.ZoomBox method) (unidec.modules.isolated_packages.ZoomSpan.ZoomSpan method) (unidec.modules.PlotBase.PlotBase method) (unidec.modules.PlottingWindow.PlottingWindowBase method) ZoomSpan (class in unidec.modules.isolated_packages.ZoomSpan)