unidec.modules.isolated_packages package¶
Submodules¶
unidec.modules.isolated_packages.FileDialogs module¶
- unidec.modules.isolated_packages.FileDialogs.open_dir_dialog(message='Select a Folder')¶
- unidec.modules.isolated_packages.FileDialogs.open_file_dialog(message='Open File', file_types='*.*', default=None)¶
- unidec.modules.isolated_packages.FileDialogs.open_multiple_dir_dialog(message, default)¶
- unidec.modules.isolated_packages.FileDialogs.open_multiple_files_dialog(message='Open Files', file_type='*.*')¶
- unidec.modules.isolated_packages.FileDialogs.open_single_dir_dialog(message, default)¶
- unidec.modules.isolated_packages.FileDialogs.save_file_dialog(message='Save File', file_types='*.*', default_file='')¶
unidec.modules.isolated_packages.MD_Fitter module¶
- unidec.modules.isolated_packages.MD_Fitter.MD_Fitter(data, mds=None, maxshift=0.1, widthguess=0.05, shiftguess=None, plot=False)¶
- unidec.modules.isolated_packages.MD_Fitter.error_function(array, massdat, psfun, posarray, nparam, maxshift, *args)¶
- unidec.modules.isolated_packages.MD_Fitter.error_function2(array, massdat, psfun, posarray, nparam, maxshift, *args)¶
- unidec.modules.isolated_packages.MD_Fitter.least_squares_minimize(massdat, array, psfun, posarray, nparam=3, maxshift=None, *args)¶
Perform least squares minimization of peaks defined in array to massdat. :param massdat: Data to fit :param array: Array of parameters for defining peaks that will be fit :param psfun: Peak shape function integer code :param args: Extra arguments for make_mass_list :return: Best fit of values in array
- unidec.modules.isolated_packages.MD_Fitter.make_mass_list(massdat, arrayin, psfun, posarray, nparam=3, maxshift=None, *args)¶
For parameters in arrayin, make mass peaks to be fit to massdat. Arrayin must be P x 3 array of (mid, fwhm, area). :param massdat: Data to be fit :param arrayin: Parameters defining peaks :param psfun: Peak shape function integer code :param startarray: Starting array (not currently used but can be used to restrict some guesses) :param args: Extra arguments (such as nonorm to prevent normalization) :return:
unidec.modules.isolated_packages.MD_compare module¶
- class unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow(parent, datalist=None, filelist=None, config=None)¶
Bases:
Frame- file_dialog(e=0)¶
- get_data(file1, file2)¶
- makeplot(e)¶
- notchanged¶
# Make the menu filemenu = wx.Menu() if self.datalist.shape[0] > 1:
- extractwindow = filemenu.Append(wx.ID_ANY, “Extract Mass Defect Values”,
“Open Window to Extract Mass Defect Values”)
self.Bind(wx.EVT_MENU, self.on_extract_window, extractwindow) filemenu.AppendSeparator()
- menu_save_fig_png = filemenu.Append(wx.ID_ANY, “Save Figures as PNG”,
“Save all figures as PNG in central directory”)
- menu_save_fig_pdf = filemenu.Append(wx.ID_ANY, “Save Figures as PDF”,
“Save all figures as PDF in central directory”)
self.Bind(wx.EVT_MENU, self.on_save_fig, menu_save_fig_png) self.Bind(wx.EVT_MENU, self.on_save_fig_pdf, menu_save_fig_pdf)
self.plotmenu = wx.Menu() self.menuaddline = self.plotmenu.Append(wx.ID_ANY, “Add Horizontal Line”,
“Add Horizontal Line at Specific Y Value”)
- self.menuaddmultiline = self.plotmenu.Append(wx.ID_ANY, “Add Multiple Lines”,
“Add Multiple Horizontal Lines at Specific Y Values”)
- self.menufit = self.plotmenu.Append(wx.ID_ANY, “Fit Peaks”,
“Fit total mass defect peaks”)
- self.menupeaks = self.plotmenu.Append(wx.ID_ANY, “Label Peaks”,
“Label peaks”)
- self.menulinreg = self.plotmenu.Append(wx.ID_ANY, “Linear Regression”,
“Linear Regression”)
self.menucom = self.plotmenu.Append(wx.ID_ANY, “Center of Mass”, “Center of Mass”)
self.Bind(wx.EVT_MENU, self.on_add_line, self.menuaddline) self.Bind(wx.EVT_MENU, self.on_add_multilines, self.menuaddmultiline) self.Bind(wx.EVT_MENU, self.on_fit, self.menufit) self.Bind(wx.EVT_MENU, self.on_label_peaks, self.menupeaks) self.Bind(wx.EVT_MENU, self.on_linear_regression, self.menulinreg) self.Bind(wx.EVT_MENU, self.on_com, self.menucom)
menu_bar = wx.MenuBar() menu_bar.Append(filemenu, “&File”) menu_bar.Append(self.plotmenu, “Plot”) self.SetMenuBar(menu_bar)
- on_close(e)¶
Close the window. Will try to set self.config.molig as self.m0. :param e: Unused event :return: None
- on_f1button(e=0)¶
- on_f2button(e=0)¶
- on_replot(e=0)¶
unidec.modules.isolated_packages.biopolymer_calculator module¶
unidec.modules.isolated_packages.mql_tool module¶
unidec.modules.isolated_packages.preset_manager module¶
- class unidec.modules.isolated_packages.preset_manager.TestWindow(parent=None)¶
Bases:
Frame- on_defaults(e)¶
unidec.modules.isolated_packages.score_window module¶
- class unidec.modules.isolated_packages.score_window.ScoreListCtrl(parent, id_value, pos=wx.Point(-1, -1), size=wx.Size(-1, -1))¶
Bases:
Grid- OnKey(event)¶
- clear_list()¶
- copy()¶
Copies the current range of select cells to clipboard.
- populate(pks)¶
- unidec.modules.isolated_packages.score_window.score_plots(eng)¶
- unidec.modules.isolated_packages.score_window.score_plots2(eng, save=False)¶
- unidec.modules.isolated_packages.score_window.score_window(eng)¶
- unidec.modules.isolated_packages.score_window.scr(score)¶
- unidec.modules.isolated_packages.score_window.scr2(p)¶
unidec.modules.isolated_packages.spreadsheet module¶
- class unidec.modules.isolated_packages.spreadsheet.CutomGridCellAutoWrapStringRenderer¶
Bases:
GridCellRenderer- Clone() GridCellRenderer¶
This function must be implemented in derived classes to return a copy of itself.
- Draw(grid, attr, dc, rect, row, col, isSelected)¶
Draw the given cell on the provided DC inside the given rectangle using the style specified by the attribute and the default or selected state corresponding to the isSelected value.
- GetBestSize(grid, attr, dc, row, col) wx.Size¶
Get the preferred size of the cell for its contents.
- class unidec.modules.isolated_packages.spreadsheet.MyApp(redirect=False, filename=None, useBestVisual=False, clearSigInt=True)¶
Bases:
App,InspectionMixin- OnInit(self) bool¶
- class unidec.modules.isolated_packages.spreadsheet.MyGrid(parent, panel)¶
Bases:
Grid- add_cols(event)¶
- add_history(change)¶
- add_line(**kwargs)¶
- add_rows(event=None)¶
- autoscale_column_width()¶
- clear_all()¶
- color_column(col, color)¶
- color_columns_by_keyword(keyword, color)¶
- copy(event)¶
Copies range of selected cells to clipboard.
- cut(event)¶
- delete(event)¶
- delete_all()¶
- delete_cols(event)¶
- delete_rows(event)¶
- fill_empty(fillvalue='0')¶
- get_col_headers()¶
- get_df()¶
- get_list()¶
- get_selected_cells()¶
- get_selected_rows()¶
- get_selection()¶
Returns selected range’s start_row, start_col, end_row, end_col If there is no selection, returns selected cell’s start_row=end_row, start_col=end_col
- get_table()¶
- hide_columns(index)¶
- hide_columns_by_keyword(keyword)¶
- hide_empty_columns()¶
- is_empty_column(col)¶
- on_cell_right_click(event)¶
- on_change(event)¶
- on_hide_columns(event)¶
- on_key(event)¶
Handles all key events.
- on_label_right_click(event)¶
- open_link(event)¶
- paste(event)¶
- remove_empty(col_header=None)¶
- rename_col(event)¶
- save_file(filename=None)¶
Saves the grid to a file. :param filename: filename to save to :return: None
- set_col_headers(headers)¶
- set_df(df)¶
- set_row_values(row, **kwargs)¶
- show_all_columns(event=None)¶
- show_columns_by_keyword(keyword)¶
- sort_by_column(column)¶
- sort_by_selected_column(event)¶
- undo()¶
- class unidec.modules.isolated_packages.spreadsheet.SpreadsheetFrame(nrows, ncolumns, title='')¶
Bases:
Frame
unidec.modules.isolated_packages.texmaker module¶
Created on Wed Apr 02 15:52:23 2014
@author: Michael.Marty
- unidec.modules.isolated_packages.texmaker.MakeTexReport(fname, config, path, peaks, labels, names, color, figureflags)¶
- unidec.modules.isolated_packages.texmaker.PDFTexReport(fname)¶