unidec.UniDecImporter.Agilent package¶

Submodules¶

unidec.UniDecImporter.Agilent.AgilentImporter module¶

class unidec.UniDecImporter.Agilent.AgilentImporter.AgilentImporter(path, **kwargs)¶

Bases: Importer

Imports Agilent data files.

Note: Agilent scans are 0 indexed, so the first scan is scan 0, not scan 1.

close()¶

get_all_scans()¶

get_avg_scan(scan_range=None, time_range=None, mzbins=None)¶: Returns merged 1D MS data from mzML import :return: merged data

get_ms_order(scan=1)¶

get_polarity(scan=1)¶

get_single_scan(scan, threshold=-1)¶

get_tic()¶

init_scans()¶

unidec.UniDecImporter.Agilent.MZFILE module¶

class unidec.UniDecImporter.Agilent.MZFILE.MZFile(datafile, **kwargs)¶

Bases: object

average_scan(scan_range, scans)¶

close()¶

cscan(index)¶: Calculates a centroided scan from profile-mode data. If a profile mode copy of the specified scan is not available, this raises an exception; in that case, you can use mzFile.scan() with mode = ‘centroid’ to return the machine-centroided scan.

headers()¶

scan(index, mode=None)¶: Returns a spectrum from the specified scan index, where type is controlled by mode argument; defaults to prioiritize Peak (Centroid) and then try Profile. If the requested mode is not present, an empty spectrum will be returned. Alternative modes are ‘profile’, ‘centroid’ or ‘profileElsePeak’.

scan_info(start_time=None, stop_time=None, start_mz=None, stop_mz=None)¶

scan_range()¶

time_range()¶

uv_trace()¶

xic(start_time=None, stop_time=None, start_mz=None, stop_mz=None, filter=None, UV=False)¶

unidec.UniDecImporter.Agilent.MZFILE.aggregate_points(pointlist, distance_function=None, MAX_WIDTH=0.025)¶: Given a list of points (which may be floats or tuples with the position-relevant value in the first position), returns a list of grouped points such that all points within a group are within MAX_WIDTH of each other.

unidec.UniDecImporter.Agilent.MZFILE.average(xs, weights=None)¶

Module contents¶