unidec.UniDecImporter.MZML package¶

Submodules¶

unidec.UniDecImporter.MZML.mzML module¶

class unidec.UniDecImporter.MZML.mzML.MZMLImporter(path, *args, **kwargs)¶

Bases: Importer

Imports mzML data files.

Note: mzML files are 1 indexed, so the first scan is 1, not 0.

avg_safe(scan_range=None, time_range=None)¶

close()¶

get_all_imms_scans()¶

get_all_scans(threshold=-1)¶

get_avg_scan(scan_range=None, time_range=None)¶: Returns merged 1D MS data from mzML import :return: merged data

get_cdms_data(scan_range=None)¶

get_inj_time_array()¶

get_isolation_mz_width(s)¶

get_ms_order(scan=1)¶

get_polarity(scan=1)¶

get_property(s, name)¶

get_single_scan(scan)¶

get_tic()¶

init_scans()¶

reset_reader()¶

unidec.UniDecImporter.MZML.mzML.auto_gzip(mzml_path)¶

unidec.UniDecImporter.MZML.mzML.get_data_from_spectrum(spectrum, threshold=-1)¶

unidec.UniDecImporter.MZML.mzML.get_im_data_from_spectrum(spectrum, threshold=-1)¶

unidec.UniDecImporter.MZML.mzML.get_inj_time(spectrum)¶

unidec.UniDecImporter.MZML.mzML.gzip_files(mzml_path, out_path)¶: Create and indexed gzip mzML file from a plain mzML.

unidec.UniDecImporter.MZML.mzML.search_by_id(obo, id)¶

Module contents¶