unidecΒΆ
- unidec package
- Subpackages
- unidec.LipiDec package
- unidec.iFAMS package
- unidec.metaunidec package
- Subpackages
- Submodules
- unidec.metaunidec.image_plotter module
- unidec.metaunidec.imzml_reader module
- unidec.metaunidec.metafft module
- unidec.metaunidec.mudeng module
- unidec.metaunidec.mudhelp module
- unidec.metaunidec.mudstruct module
- unidec.metaunidec.mudview module
- unidec.metaunidec.test_MUD module
- unidec.metaunidec.ultrameta module
- Module contents
- unidec.modules package
- Subpackages
- Submodules
- unidec.modules.AutocorrWindow module
- unidec.modules.CDCal module
- unidec.modules.CDEng module
- unidec.modules.ChromEng module
- unidec.modules.ColorPlot module
- unidec.modules.DoubleDec module
- unidec.modules.Extract2D module
- unidec.modules.GridDecon module
- unidec.modules.GridDecon2 module
- unidec.modules.HTEng module
- unidec.modules.IM_functions module
- unidec.modules.IM_windows module
- unidec.modules.ManualSelectionWindow module
- unidec.modules.MassDefectExtractor module
- unidec.modules.MassDefects module
- unidec.modules.MassFitter module
- unidec.modules.MassSpecBuilder module
- unidec.modules.NanodiscBuilder module
- unidec.modules.PlotAnimations module
- unidec.modules.PlotBase module
- unidec.modules.PlottingWindow module
- unidec.modules.SubDiv module
- unidec.modules.UniFit module
- unidec.modules.UniList module
- unidec.modules.biopolymertools module
- unidec.modules.data_reader module
- unidec.modules.fft_window module
- unidec.modules.fitting module
- unidec.modules.hdf5_tools module
- unidec.modules.hramtools module
- unidec.modules.html_writer module
- unidec.modules.i2ms_importer module
- unidec.modules.isotopetools module
- unidec.modules.mainwindow module
- unidec.modules.masstools module
- unidec.modules.matchtools module
- unidec.modules.miscwindows module
- unidec.modules.mzMLimporter module
- unidec.modules.mzXML_importer module
- unidec.modules.mzmlparse_auto module
- unidec.modules.nativez module
- unidec.modules.peakstructure module
- unidec.modules.peakwidthtools module
- unidec.modules.plateplot module
- unidec.modules.plot1d module
- unidec.modules.plot2d module
- unidec.modules.plot3d module
- unidec.modules.plot_waterfall module
- unidec.modules.unidec_enginebase module
- unidec.modules.unidec_presbase module
- unidec.modules.unidecstructure module
- Module contents
- Submodules
- unidec.DataCollector module
DCDropTargetDataCollectorDataCollector.check_cmaps()DataCollector.load()DataCollector.load_x_from_peaks()DataCollector.make_grid_plots()DataCollector.make_shade_plot()DataCollector.makeplot2()DataCollector.menu_fcmaps()DataCollector.menu_xcmaps()DataCollector.on_2dgrid()DataCollector.on_absolute_path()DataCollector.on_add_x()DataCollector.on_add_y()DataCollector.on_animate()DataCollector.on_animate2()DataCollector.on_autocorr()DataCollector.on_choose_dir()DataCollector.on_defect()DataCollector.on_doubledec()DataCollector.on_export()DataCollector.on_fitting()DataCollector.on_hdf5_open()DataCollector.on_kd_fit()DataCollector.on_load()DataCollector.on_local_path()DataCollector.on_motion()DataCollector.on_msms_norm()DataCollector.on_run()DataCollector.on_save()DataCollector.on_save_fig()DataCollector.on_save_figPDF()DataCollector.on_ylabel()DataCollector.open_hdf5()DataCollector.shade_plots()DataCollector.update_get()DataCollector.update_set()
ListCtrlPanelXValueListCtrlYValueListCtrl
- unidec.GUniDec module
UniDecAppUniDecApp.after_pick_peaks()UniDecApp.after_unidec_run()UniDecApp.init()UniDecApp.make_cube_plot()UniDecApp.make_im_plots()UniDecApp.makeplot1()UniDecApp.makeplot6()UniDecApp.on_2d_grid()UniDecApp.on_additional_parameters()UniDecApp.on_auto()UniDecApp.on_autoformat()UniDecApp.on_batch()UniDecApp.on_batch2()UniDecApp.on_batch_raw()UniDecApp.on_calibrate()UniDecApp.on_center_of_mass()UniDecApp.on_charge_plot()UniDecApp.on_color_plot1d()UniDecApp.on_data_collector()UniDecApp.on_dataprep_button()UniDecApp.on_delete()UniDecApp.on_ex()UniDecApp.on_export_params()UniDecApp.on_fft_window()UniDecApp.on_file_name()UniDecApp.on_fit_masses()UniDecApp.on_flip_mode()UniDecApp.on_flip_tabbed()UniDecApp.on_flip_twave()UniDecApp.on_full()UniDecApp.on_gen_html_report()UniDecApp.on_grid_decon()UniDecApp.on_iFAMS()UniDecApp.on_im_extract()UniDecApp.on_im_tools()UniDecApp.on_import_wizard()UniDecApp.on_integrate()UniDecApp.on_kendrick()UniDecApp.on_label_avg_charge_states()UniDecApp.on_label_max_charge_states()UniDecApp.on_left_click()UniDecApp.on_load_everything()UniDecApp.on_load_state()UniDecApp.on_mass_process()UniDecApp.on_mass_tools()UniDecApp.on_mql()UniDecApp.on_nativez_tools()UniDecApp.on_navia()UniDecApp.on_open()UniDecApp.on_open_file()UniDecApp.on_open_kernel()UniDecApp.on_paste_spectrum()UniDecApp.on_pdf_report()UniDecApp.on_pick_peaks()UniDecApp.on_plot_composite()UniDecApp.on_plot_isotope_distribution()UniDecApp.on_plot_nativeccs()UniDecApp.on_plot_offsets()UniDecApp.on_plot_peaks()UniDecApp.on_raw_open()UniDecApp.on_redo()UniDecApp.on_replot()UniDecApp.on_save_state()UniDecApp.on_score()UniDecApp.on_score2()UniDecApp.on_score_FDR()UniDecApp.on_score_label()UniDecApp.on_score_window()UniDecApp.on_smash()UniDecApp.on_super_batch()UniDecApp.on_undo()UniDecApp.on_unidec_button()UniDecApp.on_unidec_path()UniDecApp.on_write_hdf5()UniDecApp.on_zerocharge_mass()UniDecApp.remake_mainwindow()
- unidec.ImportWizard module
- unidec.Launcher module
- unidec.MetaUniDec module
MetaUniDecBaseMetaUniDecBase.export_vars()MetaUniDecBase.export_vars_dialog()MetaUniDecBase.import_vars()MetaUniDecBase.make2dplots()MetaUniDecBase.make_top()MetaUniDecBase.make_waterfall_plots()MetaUniDecBase.makeplot1()MetaUniDecBase.makeplot2_mud()MetaUniDecBase.makeplot3()MetaUniDecBase.makeplot5()MetaUniDecBase.makeplot6()MetaUniDecBase.makeplot7()MetaUniDecBase.makeplot8()MetaUniDecBase.makeplot9()MetaUniDecBase.on_2d_grid()MetaUniDecBase.on_animate_2d()MetaUniDecBase.on_animate_2d_mass()MetaUniDecBase.on_animate_2d_mz()MetaUniDecBase.on_animate_annotated_mass()MetaUniDecBase.on_animate_annotated_mz()MetaUniDecBase.on_animate_mass()MetaUniDecBase.on_animate_mz()MetaUniDecBase.on_auto()MetaUniDecBase.on_autocorr2()MetaUniDecBase.on_autocorr_window_mud()MetaUniDecBase.on_charge_states_mud()MetaUniDecBase.on_color_change()MetaUniDecBase.on_dataprep_button()MetaUniDecBase.on_delete_spectrum()MetaUniDecBase.on_export_params()MetaUniDecBase.on_fft_window()MetaUniDecBase.on_fft_window2()MetaUniDecBase.on_filter_peaks_MUD()MetaUniDecBase.on_full()MetaUniDecBase.on_ignore()MetaUniDecBase.on_isolate()MetaUniDecBase.on_kendrick()MetaUniDecBase.on_mass_tools()MetaUniDecBase.on_pick_peaks()MetaUniDecBase.on_pick_scanpeaks()MetaUniDecBase.on_plot_composite()MetaUniDecBase.on_redo()MetaUniDecBase.on_repopulate()MetaUniDecBase.on_undo()MetaUniDecBase.on_unidec_button()MetaUniDecBase.plot_sums()MetaUniDecBase.recolor_spectra()MetaUniDecBase.recursive_repack_hdf5()MetaUniDecBase.rename_var1()MetaUniDecBase.rename_var2()MetaUniDecBase.repack_hdf5()
UniDecAppUniDecApp.add_files()UniDecApp.init()UniDecApp.make_image_plot()UniDecApp.makeplot6()UniDecApp.makeplot8()UniDecApp.makeplot9()UniDecApp.new_file()UniDecApp.on_add_file()UniDecApp.on_additional_filters()UniDecApp.on_additional_parameters()UniDecApp.on_additional_plotting()UniDecApp.on_animate_help()UniDecApp.on_auto_import_help()UniDecApp.on_auto_match_help()UniDecApp.on_autocorr_help()UniDecApp.on_autoformat()UniDecApp.on_baseline_help()UniDecApp.on_batch_config()UniDecApp.on_batch_cre()UniDecApp.on_batch_extract()UniDecApp.on_batch_help()UniDecApp.on_batch_run()UniDecApp.on_data_collector()UniDecApp.on_data_processing()UniDecApp.on_delete()UniDecApp.on_exp_fit()UniDecApp.on_fft_help()UniDecApp.on_fit()UniDecApp.on_flip_tabbed()UniDecApp.on_getting_started()UniDecApp.on_hdf5_to_imzml()UniDecApp.on_imaging_viewer()UniDecApp.on_import_multiple_scans()UniDecApp.on_import_multiple_times()UniDecApp.on_import_mzml()UniDecApp.on_import_mzml_scans()UniDecApp.on_import_window()UniDecApp.on_imzml_to_hdf5()UniDecApp.on_left_click()UniDecApp.on_lin_fit()UniDecApp.on_new_file()UniDecApp.on_oligomer_help()UniDecApp.on_open()UniDecApp.on_open_csv()UniDecApp.on_paste_spectrum()UniDecApp.on_peak_selection()UniDecApp.on_peak_width_tool_help()UniDecApp.on_peak_window()UniDecApp.on_plate_viewer()UniDecApp.on_plot_window()UniDecApp.on_presets_help()UniDecApp.on_replot()UniDecApp.on_sig_fit()UniDecApp.on_ultra_meta()UniDecApp.on_unidec_parameters()UniDecApp.on_wizard()UniDecApp.open_csv()UniDecApp.open_file()UniDecApp.peak_plots()UniDecApp.remake_mainwindow()
- unidec.UPP module
HelpDlgMyFileDropTargetUPPAppUPPApp.add_files()UPPApp.clear_all()UPPApp.color_columns()UPPApp.get_from_gui()UPPApp.load_file()UPPApp.load_to_gui()UPPApp.on_add_files()UPPApp.on_exit()UPPApp.on_help_page()UPPApp.on_hide_columns()UPPApp.on_hide_empty_columns()UPPApp.on_hide_height_columns()UPPApp.on_hide_percent_columns()UPPApp.on_load_file()UPPApp.on_open_all_html()UPPApp.on_open_global_html()UPPApp.on_open_unidec()UPPApp.on_run()UPPApp.on_run_selected()UPPApp.on_save_file()UPPApp.open_results_file()UPPApp.open_unidec()UPPApp.reset_hidden_columns()UPPApp.update_progress()
- unidec.UniChrom module
ChromAppChromApp.batch_run()ChromApp.export_selection()ChromApp.get_from_gui()ChromApp.init()ChromApp.load_to_gui()ChromApp.make_selection()ChromApp.makeplotc()ChromApp.on_batch_chrom1()ChromApp.on_batch_chrom_dirs()ChromApp.on_chrom_peaks()ChromApp.on_clear_spectra()ChromApp.on_delete()ChromApp.on_list_add()ChromApp.on_manual_add()ChromApp.on_open()ChromApp.on_open_dir()ChromApp.on_open_file()ChromApp.on_open_hdf5()ChromApp.on_open_ud()ChromApp.on_pick_peaks_individual()ChromApp.on_replot()ChromApp.on_selection()ChromApp.on_selection_event()ChromApp.on_single_charge_states()ChromApp.on_single_delete()ChromApp.on_single_differences()ChromApp.on_single_label_masses()ChromApp.on_sliding_window()ChromApp.on_timepart()ChromApp.on_unidec_run()ChromApp.open_file()ChromApp.open_hdf5_file()ChromApp.peak_plots()ChromApp.plot_chrom_shading()ChromApp.plot_single_mass()ChromApp.plot_single_mz()ChromApp.plot_single_pks()ChromApp.quick_auto()ChromApp.select_all()ChromApp.update_hdf5()
- unidec.UniChromCD module
UniChromCDAppUniChromCDApp.add_eic()UniChromCDApp.add_mass_eic()UniChromCDApp.export_arrays()UniChromCDApp.init()UniChromCDApp.load_chroms()UniChromCDApp.make_2d_plot()UniChromCDApp.make_charge_time_2dplot()UniChromCDApp.make_cube_plot()UniChromCDApp.make_mass_cube_plot()UniChromCDApp.make_mass_time_2dplot()UniChromCDApp.make_mz_time_2dplot()UniChromCDApp.make_tic_plot()UniChromCDApp.on_auto_set_ct()UniChromCDApp.on_autocorr2()UniChromCDApp.on_dataprep_button()UniChromCDApp.on_export_arrays()UniChromCDApp.on_ignore_repopulate()UniChromCDApp.on_load_chroms()UniChromCDApp.on_open_file()UniChromCDApp.on_pick_peaks()UniChromCDApp.on_plot_kernel()UniChromCDApp.on_replot()UniChromCDApp.on_replot_chrom()UniChromCDApp.on_run_all_ht()UniChromCDApp.on_run_ccs()UniChromCDApp.on_run_eic_ccs()UniChromCDApp.on_run_eic_ht()UniChromCDApp.on_run_tic_ht()UniChromCDApp.on_select_massz_range()UniChromCDApp.on_select_mzz_region()UniChromCDApp.on_select_swoop()UniChromCDApp.on_select_time_range()UniChromCDApp.on_select_time_range_decon()UniChromCDApp.plot_chromatograms()UniChromCDApp.plot_mass_for_eic()UniChromCDApp.run_all_ht()UniChromCDApp.run_all_mass_transform()UniChromCDApp.run_eic_ht()UniChromCDApp.run_tic_ht()UniChromCDApp.save_chroms()UniChromCDApp.select_ht_range()
- unidec.UniDecCD module
UniDecCDAppUniDecCDApp.dataprep()UniDecCDApp.init()UniDecCDApp.make_mzmass_plot()UniDecCDApp.make_mzmass_plot_continuous()UniDecCDApp.makeplot1()UniDecCDApp.makeplot3()UniDecCDApp.on_batch()UniDecCDApp.on_calibrate()UniDecCDApp.on_compare()UniDecCDApp.on_compare2()UniDecCDApp.on_compare_proc()UniDecCDApp.on_dataprep_button()UniDecCDApp.on_exe_mode()UniDecCDApp.on_gen_html_report()UniDecCDApp.on_open()UniDecCDApp.on_open_cdms_file()UniDecCDApp.on_open_file()UniDecCDApp.on_peak_width_tool()UniDecCDApp.on_pick_peaks()UniDecCDApp.on_refresh()UniDecCDApp.on_replot()UniDecCDApp.on_smash()UniDecCDApp.on_stori()UniDecCDApp.on_unidec_button()UniDecCDApp.pick_peaks()UniDecCDApp.plotkernel()UniDecCDApp.plotnoise()UniDecCDApp.remake_mainwindow()
- unidec.batch module
UniDecBatchProcessorUniDecBatchProcessor.get_file_path()UniDecBatchProcessor.get_mod_files()UniDecBatchProcessor.get_tol()UniDecBatchProcessor.open_all_html()UniDecBatchProcessor.open_global_html()UniDecBatchProcessor.run_correct_pair()UniDecBatchProcessor.run_dar()UniDecBatchProcessor.run_df()UniDecBatchProcessor.run_file()UniDecBatchProcessor.write_peaks()UniDecBatchProcessor.write_xlsx()
check_for_floatable()check_for_value()check_for_word_in_keys()find_file()get_time_range()remove_columns()set_param_from_row()set_row_merge()
- unidec.engine module
UniDecUniDec.autocorrelation()UniDec.autointegrate()UniDec.autorun()UniDec.center_of_mass()UniDec.convolve_peaks()UniDec.dscore()UniDec.estimate_FDR()UniDec.estimate_areas()UniDec.export_params()UniDec.filter_peaks()UniDec.fit_all_masses()UniDec.get_charge_peaks()UniDec.get_mzstack()UniDec.get_spectrum_peaks()UniDec.get_zstack()UniDec.kendrick_continuous()UniDec.kendrick_peaks()UniDec.label_plot_correct()UniDec.load_state()UniDec.make_plot()UniDec.makeplot1()UniDec.makeplot1im()UniDec.mass_grid_to_f_grid()UniDec.normalize_peaks()UniDec.open_file()UniDec.open_test_spectrum()UniDec.pass_data_in()UniDec.pick_peaks()UniDec.pks_csscore()UniDec.pks_fscore()UniDec.pks_mscore()UniDec.pks_uscore()UniDec.process_data()UniDec.process_mass_data()UniDec.raw_process()UniDec.run_unidec()UniDec.save_state()UniDec.setup_peaks()UniDec.unidec_imports()
score_minimum()
- unidec.tools module
FD_gauss_wavelet()auto_noise_level()auto_peak_width()autocorr()average_bin_size()broaden()cal_data()calc_FWHM()calc_local_mins()calc_swoop()cconv()center_of_mass()color_map_array()combine()combine_all()commonprefix()continuous_wavelet_transform()conv_peak_shape_kernel()correlation_integration()create_color_cycle()data_extract()data_extract_grid()datachop()datacompsub()dataexport()dataexportbin()dataprep()datasimpsub()decimal_formatter()detectoreff()double_fft_diff()exe_call()extract_from_data_matrix()fake_log()fft()fft_diff()fft_process()find_kernel_file()fix_double_zeros()fix_textpos()gaussian_backgroud_subtract()get_color_from_index()get_glyco_indexes()get_importer()get_luminance()get_max_time()get_polarity()get_swoop_mz_minmax()get_tvalue()get_z_offset()get_zvalue()gsmooth()header_test()index_to_oname()integrate()intensitythresh()intensitythresh_del()intensitythresh_sub()interp_pos()interp_val()isempty()kendrick_analysis()lengths()limit_data()linear_axis()linear_interpolation()linearize()lintegrate()linterpolate()load_mz_file()localmax()localmax2()localmaxpos()make_all_matches()make_alpha_cmap()make_isolated_match()make_peak_shape()make_peaks_mztab()make_peaks_mztab_spectrum()makeconvspecies()makespecfun()mass_weighted_average()match()match_dirs_recursive()match_files()match_files_recursive()mergedata()mergedata2d()mergedata2dexact()mergepeaks()nearest()nearestunsorted()noise_level2()nonlinear_axis()nonlinearize()nonlinstickconv()normalize()normalize_extracts()pad_data()pad_data_length()pad_two_power()pair_glyco_matches()peakdetect()peakdetect_nonlinear()peaks_error_FWHM()peaks_error_mean()polydispersity_index()polynomial_background_subtract()predict_charge()remove_middle_zeros()remove_noise()removeduplicates()rfft()round_to_nearest()safedivide()safedivide1()savetxt()savgol()savgol_background_subtract()simchargefit()simp_string_to_value()simple_extract()simple_mass_defect()single_cwt()smartdecode()smash()smash2d()solve_for_mass()sparse()stepmax()stickconv()sticks_only()string_to_int()string_to_value()strip_char_from_string()subtract_and_divide()unidec_call()unsparse()waters_convert2()weighted_avg()weighted_std()wide_sse()win_autocorr_grid()win_fft_diff()win_fft_grid()win_fft_grid_single()windowed_autocorr()windowed_fft()windowed_fft_single()zip_folder()zipdir()
- Module contents
- Subpackages