unidec.modules.isolated_packages package¶

Submodules¶

unidec.modules.isolated_packages.FileDialogs module¶

unidec.modules.isolated_packages.FileDialogs.open_dir_dialog(message='Select a Folder')¶

unidec.modules.isolated_packages.FileDialogs.open_file_dialog(message='Open File', file_types='*.*', default=None)¶

unidec.modules.isolated_packages.FileDialogs.open_multiple_dir_dialog(message, default)¶

unidec.modules.isolated_packages.FileDialogs.open_multiple_files_dialog(message='Open Files', file_type='*.*')¶

unidec.modules.isolated_packages.FileDialogs.open_single_dir_dialog(message, default)¶

unidec.modules.isolated_packages.FileDialogs.save_file_dialog(message='Save File', file_types='*.*', default_file='')¶

unidec.modules.isolated_packages.MD_Fitter module¶

unidec.modules.isolated_packages.MD_Fitter.MD_Fitter(data, mds=None, maxshift=0.1, widthguess=0.05, shiftguess=None, plot=False)¶

unidec.modules.isolated_packages.MD_Fitter.error_function(array, massdat, psfun, posarray, nparam, maxshift, *args)¶

unidec.modules.isolated_packages.MD_Fitter.error_function2(array, massdat, psfun, posarray, nparam, maxshift, *args)¶

unidec.modules.isolated_packages.MD_Fitter.least_squares_minimize(massdat, array, psfun, posarray, nparam=3, maxshift=None, *args)¶: Perform least squares minimization of peaks defined in array to massdat. :param massdat: Data to fit :param array: Array of parameters for defining peaks that will be fit :param psfun: Peak shape function integer code :param args: Extra arguments for make_mass_list :return: Best fit of values in array

unidec.modules.isolated_packages.MD_Fitter.make_mass_list(massdat, arrayin, psfun, posarray, nparam=3, maxshift=None, *args)¶: For parameters in arrayin, make mass peaks to be fit to massdat. Arrayin must be P x 3 array of (mid, fwhm, area). :param massdat: Data to be fit :param arrayin: Parameters defining peaks :param psfun: Peak shape function integer code :param startarray: Starting array (not currently used but can be used to restrict some guesses) :param args: Extra arguments (such as nonorm to prevent normalization) :return:

unidec.modules.isolated_packages.MD_compare module¶

class unidec.modules.isolated_packages.MD_compare.MassDefectCompareWindow(*args: Any, **kwargs: Any)¶

Bases: Frame

file_dialog(e=0)¶

get_data(file1, file2)¶

makeplot(e)¶

on_close(e)¶: Close the window. Will try to set self.config.molig as self.m0. :param e: Unused event :return: None

on_f1button(e=0)¶

on_f2button(e=0)¶

on_replot(e=0)¶

unidec.modules.isolated_packages.biopolymer_calculator module¶

class unidec.modules.isolated_packages.biopolymer_calculator.BiopolymerFrame(*args: Any, **kwargs: Any)¶

Bases: Dialog

calculate(e=0)¶

close_ok(e=None)¶

on_close_cancel(e)¶: Close the dialog but do not modify any of the values. :param e: Unused event :return: None

unidec.modules.isolated_packages.mql_tool module¶

class unidec.modules.isolated_packages.mql_tool.MQL_TOOL(file)¶

Bases: object

query(input_query, pks)¶

unidec.modules.isolated_packages.preset_manager module¶

class unidec.modules.isolated_packages.preset_manager.TestWindow(*args: Any, **kwargs: Any)¶

Bases: Frame

on_defaults(e)¶

unidec.modules.isolated_packages.preset_manager.make_preset_menu(toppath=None, exclude_dir=None, topi=1500, ext='', exclude_ext=None, exclude_dir_list=None)¶

unidec.modules.isolated_packages.score_window module¶

class unidec.modules.isolated_packages.score_window.ScoreFrame(*args: Any, **kwargs: Any)¶

Bases: Frame

populate(pks)¶

class unidec.modules.isolated_packages.score_window.ScoreListCtrl(*args: Any, **kwargs: Any)¶

Bases: Grid

OnKey(event)¶

clear_list()¶

copy()¶: Copies the current range of select cells to clipboard.

populate(pks)¶

unidec.modules.isolated_packages.score_window.score_plots(eng)¶

unidec.modules.isolated_packages.score_window.score_plots2(eng, save=False)¶

unidec.modules.isolated_packages.score_window.score_window(eng)¶

unidec.modules.isolated_packages.score_window.scr(score)¶

unidec.modules.isolated_packages.score_window.scr2(p)¶

unidec.modules.isolated_packages.spreadsheet module¶

class unidec.modules.isolated_packages.spreadsheet.CutomGridCellAutoWrapStringRenderer(*args: Any, **kwargs: Any)¶

Bases: GridCellRenderer

Clone()¶

Draw(grid, attr, dc, rect, row, col, isSelected)¶

GetBestSize(grid, attr, dc, row, col)¶

class unidec.modules.isolated_packages.spreadsheet.MyApp(*args: Any, **kwargs: Any)¶

Bases: App, InspectionMixin

OnInit()¶

class unidec.modules.isolated_packages.spreadsheet.MyGrid(*args: Any, **kwargs: Any)¶

Bases: Grid

add_cols(event)¶

add_history(change)¶

add_line(**kwargs)¶

add_rows(event=None)¶

autoscale_column_width()¶

clear_all()¶

color_column(col, color)¶

color_columns_by_keyword(keyword, color)¶

copy(event)¶: Copies range of selected cells to clipboard.

cut(event)¶

delete(event)¶

delete_all()¶

delete_cols(event)¶

delete_rows(event)¶

fill_empty(fillvalue='0')¶

get_col_headers()¶

get_df()¶

get_list()¶

get_selected_cells()¶

get_selected_rows()¶

get_selection()¶: Returns selected range’s start_row, start_col, end_row, end_col If there is no selection, returns selected cell’s start_row=end_row, start_col=end_col

get_table()¶

hide_columns(index)¶

hide_columns_by_keyword(keyword)¶

hide_empty_columns()¶

is_empty_column(col)¶

on_cell_right_click(event)¶

on_change(event)¶

on_hide_columns(event)¶

on_key(event)¶: Handles all key events.

on_label_right_click(event)¶

open_link(event)¶

paste(event)¶

remove_empty(col_header=None)¶

rename_col(event)¶

save_file(filename=None)¶: Saves the grid to a file. :param filename: filename to save to :return: None

set_col_headers(headers)¶

set_df(df)¶

set_row_values(row, **kwargs)¶

show_all_columns(event=None)¶

show_columns_by_keyword(keyword)¶

sort_by_column(column)¶

sort_by_selected_column(event)¶

undo()¶

class unidec.modules.isolated_packages.spreadsheet.SpreadsheetFrame(*args: Any, **kwargs: Any)¶: Bases: Frame

class unidec.modules.isolated_packages.spreadsheet.SpreadsheetPanel(parent, panel, nrows=0, ncolumns=0)¶

Bases: object

add_col(label='')¶

set_col_labels(labels)¶

unidec.modules.isolated_packages.texmaker module¶

Created on Wed Apr 02 15:52:23 2014

@author: Michael.Marty

unidec.modules.isolated_packages.texmaker.MakeTexReport(fname, config, path, peaks, labels, names, color, figureflags)¶

unidec.modules.isolated_packages.texmaker.PDFTexReport(fname)¶