UniDec
Universal Deconvolution of Mass and Ion Mobility Spectra
Functions | Variables
UniDec.unidec_modules.tims_import_wizard.data_importer Namespace Reference

Functions

def auto_from_wizard (lines, exedir)
 
def run_get_data (job_kwargs)
 
def MakeUniDecConfig (job_kwargs)
 
def process_from_wizard (kwargs)
 
def mp_process_from_wizard (job_list)
 
def data_import_worker (worker_queue, result_queue)
 
def split_and_strip (line, delimiter=')
 
def parse_file
 
def GetLines (InputFileName)
 
def GetStartEndMass (RawFile)
 
def get_stat_code
 
def header_desc (file_path)
 
def search_extern
 

Variables

 use_mp_import = True
 
dictionary param_file_cache = {}
 

Function Documentation

def UniDec.unidec_modules.tims_import_wizard.data_importer.auto_from_wizard (   lines,
  exedir 
)
Auto load from the import wizard

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def UniDec.unidec_modules.tims_import_wizard.data_importer.data_import_worker (   worker_queue,
  result_queue 
)

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def UniDec.unidec_modules.tims_import_wizard.data_importer.get_stat_code (   raw_file,
  stat_code,
  dir = None 
)

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def UniDec.unidec_modules.tims_import_wizard.data_importer.GetLines (   InputFileName)

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def UniDec.unidec_modules.tims_import_wizard.data_importer.GetStartEndMass (   RawFile)

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def UniDec.unidec_modules.tims_import_wizard.data_importer.header_desc (   file_path)

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def UniDec.unidec_modules.tims_import_wizard.data_importer.MakeUniDecConfig (   job_kwargs)

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def UniDec.unidec_modules.tims_import_wizard.data_importer.mp_process_from_wizard (   job_list)

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def UniDec.unidec_modules.tims_import_wizard.data_importer.parse_file (   file_path,
  exp_type = 'linear',
  collision = None,
  debug = False,
  dir = None 
)

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def UniDec.unidec_modules.tims_import_wizard.data_importer.process_from_wizard (   kwargs)
Processes row in import wizard file
and adds to data model.

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def UniDec.unidec_modules.tims_import_wizard.data_importer.run_get_data (   job_kwargs)

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def UniDec.unidec_modules.tims_import_wizard.data_importer.search_extern (   file_path,
  search_string,
  split_skip = False 
)
Pass in each string left of target value.
An example,
    target
    ------
    Trap Wave Velocity (m/s)    300
    search string='Trap Wave Velocity (m/s)'
    returns :: 300

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def UniDec.unidec_modules.tims_import_wizard.data_importer.split_and_strip (   line,
  delimiter = ' 
)

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Variable Documentation

dictionary UniDec.unidec_modules.tims_import_wizard.data_importer.param_file_cache = {}
UniDec.unidec_modules.tims_import_wizard.data_importer.use_mp_import = True