UniDec
Universal Deconvolution of Mass and Ion Mobility Spectra
Public Member Functions | List of all members
UniDec.unidec_tests.UniDecTest Class Reference
Inheritance diagram for UniDec.unidec_tests.UniDecTest:
Inheritance graph
[legend]
Collaboration diagram for UniDec.unidec_tests.UniDecTest:
Collaboration graph
[legend]

Public Member Functions

def test_spectra (self, mlist=None, ilist=None, res=1000, noise=0.0, pad=2000, window=None, plot=False, restricted=True, massbins=10, psfun=0, mzsig=None, kwargs)
 
def simpleplotter (self, m1, m2, e1, e2, i)
 
def plot_repeats (self, peaks)
 
def plot_test (self, tests, vals, testdat, testmdat, peaks)
 
def test_width (self, kwargs)
 
def test_noise (self, kwargs)
 
def test_zwidth (self, kwargs)
 
def test_baseline (self, kwargs)
 
def test_ambiguity (self, kwargs)
 
def test_density (self, kwargs)
 
def test_psfun (self, kwargs)
 
def test_widths (self, kwargs)
 
def test_sigs (self, kwargs)
 
def test_repeat (self, kwargs)
 
- Public Member Functions inherited from UniDec.unidec.UniDec
def __init__ (self)
 
def initialize (self)
 
def reset_config (self)
 
def load_config (self, f_name)
 
def export_config
 
def open_file (self, file_name, file_directory, kwargs)
 
def raw_process
 
def process_data (self, kwargs)
 
def run_unidec
 
def unidec_imports
 
def pick_peaks (self)
 
def convolve_peaks (self)
 
def autorun (self)
 
def check_badness (self)
 
def autocorrelation
 
def kendrick_peaks
 
def kendrick_continuous
 
def save_default (self)
 
def load_default (self)
 
def mass_grid_to_f_grid (self)
 
def integrate
 
def autointegrate
 
def get_auto_peak_width (self)
 
def export_params (self, e)
 
def process_mass_data (self)
 
def center_of_mass
 
def fit_all_masses (self)
 
def get_charge_peaks (self)
 
def save_state (self, file_name)
 
def load_state (self, load_path)
 
def cross_validate
 
def normalize_peaks (self)
 
def align_peaks
 
def correlate_intensities (self, pmasses=None, x_range=None, window=None, ci=0.99, kwargs)
 
def get_peaks_scores (self, window=None, x_range=None, ci=0.99, kwargs)
 
def fit_isolated_peaks (self, pmasses=None, x_range=None, window=None, norm=False, plot_fits=False, kwargs)
 
def get_errors (self, kwargs)
 
def open_test_spectrum (self, masslist=None, n=1, kwargs)
 
def make_plot
 

Additional Inherited Members

- Public Attributes inherited from UniDec.unidec.UniDec
 version
 
 config
 
 data
 
 pks
 
 autopeaks
 
 peakparams
 
 massfit
 
 massfitdat
 
 errorgrid
 

Member Function Documentation

def UniDec.unidec_tests.UniDecTest.plot_repeats (   self,
  peaks 
)

Here is the call graph for this function:

Here is the caller graph for this function:

def UniDec.unidec_tests.UniDecTest.plot_test (   self,
  tests,
  vals,
  testdat,
  testmdat,
  peaks 
)

Here is the caller graph for this function:

def UniDec.unidec_tests.UniDecTest.simpleplotter (   self,
  m1,
  m2,
  e1,
  e2,
  i 
)

Here is the caller graph for this function:

def UniDec.unidec_tests.UniDecTest.test_ambiguity (   self,
  kwargs 
)

Here is the call graph for this function:

def UniDec.unidec_tests.UniDecTest.test_baseline (   self,
  kwargs 
)

Here is the call graph for this function:

def UniDec.unidec_tests.UniDecTest.test_density (   self,
  kwargs 
)

Here is the call graph for this function:

def UniDec.unidec_tests.UniDecTest.test_noise (   self,
  kwargs 
)

Here is the call graph for this function:

def UniDec.unidec_tests.UniDecTest.test_psfun (   self,
  kwargs 
)

Here is the call graph for this function:

def UniDec.unidec_tests.UniDecTest.test_repeat (   self,
  kwargs 
)

Here is the call graph for this function:

def UniDec.unidec_tests.UniDecTest.test_sigs (   self,
  kwargs 
)

Here is the call graph for this function:

def UniDec.unidec_tests.UniDecTest.test_spectra (   self,
  mlist = None,
  ilist = None,
  res = 1000,
  noise = 0.0,
  pad = 2000,
  window = None,
  plot = False,
  restricted = True,
  massbins = 10,
  psfun = 0,
  mzsig = None,
  kwargs 
)

Here is the call graph for this function:

Here is the caller graph for this function:

def UniDec.unidec_tests.UniDecTest.test_width (   self,
  kwargs 
)

Here is the call graph for this function:

def UniDec.unidec_tests.UniDecTest.test_widths (   self,
  kwargs 
)

Here is the call graph for this function:

def UniDec.unidec_tests.UniDecTest.test_zwidth (   self,
  kwargs 
)

Here is the call graph for this function:


The documentation for this class was generated from the following file: